Evidence map›Paper›PMID 31771269›Full record

ArticleInternational journal of molecular sciences2019

Analysis of Pollen Allergens in Lily by Transcriptome and Proteome Data.

Jingxian Feng, Ze Wu, Xueqian Wang, Yaming Zhang, Nianjun Teng

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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  7. A Novel R2R3-MYB GeneFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jingxian FengCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Ze WuCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-0290-4519
Xueqian WangCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Yaming ZhangCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Nianjun TengCollege of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-1680-6987
Nanjing Agricultural University · CN

Funding

the earmarked fund for crop germplasm resources in Nanjing Agricultural University KYZZ201920the Fundamental Research Funds for the Central Universities KYTZ201602the High Level Talent Project of the Top Six Talents in Jiangsu NY-077the Modern Agricultural Industry Technology System in Jiangsu JATS[2018]006
6 · The paper itself

Abstract

The lily (Lilium spp.) anther contains a lot of pollen. It is not known if lily pollen contains allergens, and therefore screening pollen allergy-related proteins and genes is necessary. The pollen development period of lily 'Siberia' was determined by microscope observation. Early mononuclear microspores and mature pollens were used as sequencing materials. The analysis of the pollen transcriptome identified differentially expressed genes (DEGs), e.g., Profilin, Phl p 7 (Polcalcin), Ole e 1, and Phl p 11, which are associated with pollen allergens. The proteome analysis positively verified a significant increase in pollen allergenic protein content. The expression levels of LoProfiilin and LoPolcalcin, annotated as allergen proteins, gradually increased in mature pollen. LoProfiilin and LoPolcalcin were cloned and their open reading frame lengths were 396 bp and 246 bp, which encoded 131 and 81 amino acids, respectively. Amino acid sequence and structure alignment indicated that the protein sequences of LoProfilin and LoPolcalcin were highly conserved. Subcellular localization analysis showed that LoProfilin protein was localized in the cell cytoplasm and nucleus. LoProfilin and LoPolcalcin were highly expressed in mature pollen at the transcriptional and protein levels. A tertiary structure prediction analysis identified LoProfilin and LoPolcalcin as potential allergens in lily pollen.

Indexed as

TranscriptomeAllergensAmino Acid SequenceAntigens, PlantCell NucleusCytoplasmGene Expression Regulation, PlantLiliumPlant ProteinsPollenProtein Structure, SecondaryProteomeSequence AlignmentAllergensAntigens, PlantPlant ProteinsProteomeallergenLilypollenproteometranscriptome

Identifiers

PMID31771269
PMCPMC6929097
OpenAlexW2991387270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.