Evidence map›Paper›PMID 31769977›Full record

ArticleBiochemistry2019

Electron Paramagnetic Resonance Spectroscopic Identification of the Fe-S Clusters in the SPASM Domain-Containing Radical SAM Enzyme PqqE.

Lizhi Tao, Wen Zhu, Judith P Klinman, R David Britt

Abstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  8. Review
  9. Trapping a cross-linked lysine-tryptophan radical in the catalytic cycle of the radical SAM enzyme SuiB.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lizhi TaoDepartment of Chemistry , University of California , Davis , California 95616 , United States.ORCID 0000-0001-9921-2297
Wen ZhuDepartment of Chemistry, Department of Molecular and Cell Biology, and California Institute for Quantitative Biosciences , University of California , Berkeley , California 94720 , United States.ORCID 0000-0003-3190-0071
Judith P KlinmanDepartment of Chemistry, Department of Molecular and Cell Biology, and California Institute for Quantitative Biosciences , University of California , Berkeley , California 94720 , United States.ORCID 0000-0001-5734-2843
R David BrittDepartment of Chemistry , University of California , Davis , California 95616 , United States.ORCID 0000-0003-0889-8436

Funding

Looking in New Directions for Origins and Cryptic Mechanisms of Enzyme CatalysisR35GM118117 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KLINMAN, JUDITH P · 2016 to 2025
$7.5M
QUINOENZYMES: BIOGENESIS, STRUCTURE AND FUNCTIONR01GM039296 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KLINMAN, JUDITH P · 1988 to 2015
$6.3M
Supplement:Spectroscopy Investigations of Metalloenzyme MechanismsR35GM126961 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI R. David Britt · 2018 to 2026
$3.7M
Mechanisms of Radical SAM Enzymes Probed by EPR SpectroscopyR01GM104543 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BRITT, R DAVID · 2014 to 2017
$1.2M
MULTIFREQUENCY EPR/ENDOR SPECTROMETER: TSE, PRIONS10RR021075 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI BRITT, R DAVID · 2005 to 2005
$500k
NCRR NIH HHS S10 RR021075NIGMS NIH HHS R01 GM039296NIGMS NIH HHS R01 GM104543NIGMS NIH HHS R35 GM118117NIGMS NIH HHS R35 GM126961
6 · The paper itself

Abstract

Pyrroloquinoline quinone (PQQ) is an important redox active quinocofactor produced by a wide variety of bacteria. A key step in PQQ biosynthesis is a carbon-carbon cross-link reaction between glutamate and tyrosine side chains within the ribosomally synthesized peptide substrate PqqA. This reaction is catalyzed by the radical SAM enzyme PqqE. Previous X-ray crystallographic and spectroscopic studies suggested that PqqE, like the other members of the SPASM domain family, contains two auxiliary Fe-S clusters (AuxI and AuxII) in addition to the radical SAM [4Fe-4S] cluster. However, a clear assignment of the electron paramagnetic resonance (EPR) signal of each Fe-S cluster was hindered by the isolation of a His

Indexed as

Electron Spin Resonance SpectroscopyIronSulfurBiocatalysisEndopeptidasesPQQ CofactorProtein DomainsEndopeptidasesIronPQQ CofactorSulfur

Identifiers

PMID31769977
PMCPMC6959549

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.