Evidence map›Paper›PMID 31768042›Full record

ArticleNature structural & molecular biology2019

Mechanism of ribosome stalling during translation of a poly(A) tail.

Viswanathan Chandrasekaran, Szymon Juszkiewicz, Junhong Choi, Joseph D Puglisi, Alan Brown, Sichen Shao, V Ramakrishnan, Ramanujan S Hegde

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 179 citations in OpenAlex.

  1. Article
  2. Review
  3. eIF5A and polyamines restrict mRNA levels in response to ribosome stalls.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Evolution of a core ribosomal innovation in octopus.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Ribosome-associated quality control and related mechanisms.Nature structural & molecular biology · 2026
    Review
  15. Quality control and signaling pathways at stalled ribosomes.Experimental & molecular medicine · 2026
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Viswanathan Chandrasekaran *MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-0871-4740
Szymon Juszkiewicz *MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-3361-7264
Junhong ChoiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9291-5977
Joseph D PuglisiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9268-5112
Alan BrownDepartment of Biological Chemistry & Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-0021-0476
Sichen ShaoDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2679-5537
V RamakrishnanMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-4699-2194
Ramanujan S HegdeMRC Laboratory of Molecular Biology, Cambridge, UK. rhegde@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0001-8338-852X
MRC Laboratory of Molecular Biology · GBHarvard University · USStanford University · US

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
Dynamics of eukaryotic translation initiation and its controlR01GM113078 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2016 to 2021
$2.9M
Medical Research Council MC_U105184332Medical Research Council MC_UP_A022_1007NIGMS NIH HHS R01 GM051266NIGMS NIH HHS R01 GM113078Wellcome Trust 096570
6 · The paper itself

Abstract

Faulty or damaged messenger RNAs are detected by the cell when translating ribosomes stall during elongation and trigger pathways of mRNA decay, nascent protein degradation and ribosome recycling. The most common mRNA defect in eukaryotes is probably inappropriate polyadenylation at near-cognate sites within the coding region. How ribosomes stall selectively when they encounter poly(A) is unclear. Here, we use biochemical and structural approaches in mammalian systems to show that poly-lysine, encoded by poly(A), favors a peptidyl-transfer RNA conformation suboptimal for peptide bond formation. This conformation partially slows elongation, permitting poly(A) mRNA in the ribosome's decoding center to adopt a ribosomal RNA-stabilized single-stranded helix. The reconfigured decoding center clashes with incoming aminoacyl-tRNA, thereby precluding elongation. Thus, coincidence detection of poly-lysine in the exit tunnel and poly(A) in the decoding center allows ribosomes to detect aberrant mRNAs selectively, stall elongation and trigger downstream quality control pathways essential for cellular homeostasis.

Indexed as

Protein BiosynthesisHEK293 CellsHumansModels, MolecularNucleic Acid ConformationPeptidesPoly APolyadenylationPolylysineRibosomesRNA, MessengerRNA StabilityRNA, TransferRNA, Transfer, Amino AcylPeptidesPoly APolylysineRNA, MessengerRNA, TransferRNA, Transfer, Amino Acyl

Identifiers

PMID31768042
PMCPMC6900289
OpenAlexW2991309186

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.