Evidence map›Paper›PMID 31768013›Full record

ArticleScientific reports2019

Characterization of the mitochondrial genome of the pathogenic fungus Scytalidium auriculariicola (Leotiomycetes) and insights into its phylogenetics.

Cheng Chen, Qiang Li, Rongtao Fu, Jian Wang, Chuan Xiong, Zhonghan Fan, Rongping Hu, Hong Zhang, Daihua Lu

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Insights into the Phylogeny ofJournal of fungi (Basel, Switzerland) · 2026
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  4. Article
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  8. Mitochondrial Genomes from Fungal the EntomopathogenicJournal of fungi (Basel, Switzerland) · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Characterization of Complete Mitochondrial Genomes of the FiveJournal of fungi (Basel, Switzerland) · 2023
    Article
  13. Functional annotation and comparative analysis of fourSaudi journal of biological sciences · 2023
    Article
  14. Article
  15. Frontiers in microbiology · 2023
    Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Cheng ChenInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Qiang LiCollege of Pharmacy and Biological Engineering, Chengdu University, Chengdu, 610106, Sichuan, P.R. China.
Rongtao FuInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Jian WangInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Chuan XiongBiotechnology and Nuclear Technology Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610061, Sichuan, P.R. China.
Zhonghan FanInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Rongping HuInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Hong ZhangInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China.
Daihua LuInstitute of plant protection, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, Sichuan, P.R. China. daihualu@126.com.
Sichuan Academy of Agricultural Sciences · CNChengdu University · CNMinistry of Agriculture · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scytalidium auriculariicola is the causative pathogen of slippery scar disease in the cultivated cloud ear fungus, Auricularia polytricha. In the present study, the mitogenome of S. auriculariicola was sequenced and assembled by next-generation sequencing technology. The circular mitogenome is 96,857 bp long and contains 56 protein-coding genes, 2 ribosomal RNA genes, and 30 transfer RNA genes (tRNAs). The high frequency of A and T used in codons contributed to the high AT content (73.70%) of the S. auriculariicola mitogenome. Comparative analysis indicated that the base composition and the number of introns and protein-coding genes in the S. auriculariicola mitogenome varied from that of other Leotiomycetes mitogenomes, including a uniquely positive AT skew. Five distinct groups were found in the gene arrangements of Leotiomycetes. Phylogenetic analyses based on combined gene datasets (15 protein-coding genes) yielded well-supported (BPP = 1) topologies. A single-gene phylogenetic tree indicated that the nad4 gene may be useful as a molecular marker to analyze the phylogenetic relationships of Leotiomycetes species. This study is the first report on the mitochondrial genome of the genus Scytalidium, and it will contribute to our understanding of the population genetics and evolution of S. auriculariicola and related species.

Indexed as

Genome, FungalBase CompositionBiological EvolutionDatasets as TopicDNA, FungalDNA, MitochondrialDNA, RibosomalFungal ProteinsGenes, FungalHigh-Throughput Nucleotide SequencingNucleic Acid ConformationPhylogenyRepetitive Sequences, Nucleic AcidRNA, FungalRNA, RibosomalRNA, TransferDNA, FungalDNA, MitochondrialDNA, RibosomalFungal ProteinsRNA, FungalRNA, RibosomalRNA, Transfer

Identifiers

PMID31768013
PMCPMC6877775
OpenAlexW2991112067

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.