Evidence map›Paper›PMID 31767994›Full record

ArticleNature chemistry2020

A multiplexed, electrochemical interface for gene-circuit-based sensors.

Peivand Sadat Mousavi, Sarah J Smith, Jenise B Chen, Margot Karlikow, Aidan Tinafar, Clare Robinson, Wenhan Liu, Duo Ma, Alexander A Green, Shana O Kelley and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Enzymatic DNA Reaction Networks for Orchestrating Stimuli-Dependent Temporal Molecular Pulse.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Gene circuit-based sensors.Fundamental research · 2025
    Review
  11. Review
  12. Review
  13. Why cellular computations challenge our design principles.Seminars in cell & developmental biology · 2025
    Review
  14. Article
  15. Article
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  17. Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Peivand Sadat Mousavi *Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-0585-4200
Sarah J Smith *Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-6911-2383
Jenise B Chen *Department of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Margot KarlikowLeslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada.
Aidan TinafarLeslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada.
Clare RobinsonLeslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada.
Wenhan LiuInstitute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Ontario, Canada.
Duo MaBiodesign Center for Molecular Design and Biomimetics, The Biodesign Institute and the School of Molecular Sciences, Arizona State University, Tempe, AZ, USA.
Alexander A GreenBiodesign Center for Molecular Design and Biomimetics, The Biodesign Institute and the School of Molecular Sciences, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0003-2058-1204
Shana O KelleyLeslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada. shana.kelley@utoronto.ca.ORCID http://orcid.org/0000-0003-3360-5359
Keith PardeeLeslie Dan Faculty of Pharmacy, University of Toronto, Toronto, Ontario, Canada. keith.pardee@utoronto.ca.ORCID http://orcid.org/0000-0002-3812-8013
University of Toronto · CAArizona State University · USBucknell University · US

Funding

Molecular Fuses for Real-Time, Label-Free, Multiplexed Imaging of RNAs in Living CellsDP2GM126892 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI GREEN, ALEXANDER ARTHUR · 2017 to 2017
$2.3M
Programmable electrochemical gene circuit sensors for infectious disease detectionR21AI136571 · NIAID · UNIVERSITY OF TORONTO · PI GREEN, ALEXANDER ARTHUR, KELLEY, SHANA O · 2018 to 2019
$300k
CIHR 201610FDN-375469CIHR 950-231075NIAID NIH HHS R21 AI136571NIGMS NIH HHS DP2 GM126892
6 · The paper itself

Abstract

The field of synthetic biology has used the engineered assembly of synthetic gene networks to create a wide range of functions in biological systems. To date, gene-circuit-based sensors have primarily used optical proteins (for example, fluorescent, colorimetric) as reporter outputs, which has limited the potential to measure multiple distinct signals. Here we present an electrochemical interface that permits expanded multiplexed reporting for cell-free gene-circuit-based sensors. We have engineered a scalable system of reporter enzymes that cleave specific DNA sequences in solution, which results in an electrochemical signal when these newly liberated strands are captured at the surface of a nanostructured microelectrode. We describe the development of this interface and show its utility using a ligand-inducible gene circuit and toehold switch-based sensors by demonstrating the detection of multiple antibiotic resistance genes in parallel. This technology has the potential to expand the field of synthetic biology by providing an interface for materials, hardware and software.

Indexed as

Gene Regulatory NetworksGenes, MDRAlkanesulfonatesAzo CompoundsDNA-Directed RNA PolymerasesDNA Restriction EnzymesDNA, Single-StrandedDrug Resistance, MultipleElectrochemical TechniquesFluoresceinsMethylene BlueMicroelectrodesNucleic Acid HybridizationProof of Concept StudyRNA, MessengerViral Proteins6-carboxyfluoresceinAlkanesulfonatesAzo Compoundsbacteriophage T7 RNA polymeraseBHQ-1 compoundDNA-Directed RNA PolymerasesDNA Restriction EnzymesDNA, Single-StrandedFluoresceinsMethylene BlueRNA, MessengerViral Proteins

Identifiers

PMID31767994
PMCPMC7700015
OpenAlexW2990541668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.