Evidence map›Paper›PMID 31767868›Full record

ArticleNature communications2019

Atomic structure of the human herpesvirus 6B capsid and capsid-associated tegument complexes.

Yibo Zhang, Wei Liu, Zihang Li, Vinay Kumar, Ana L Alvarez-Cabrera, Emily C Leibovitch, Yanxiang Cui, Ye Mei, Guo-Qiang Bi, Steve Jacobson and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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  5. Article
  6. Structures of pseudorabies virus capsids.Nature communications · 2022
    Article
  7. Article
  8. Review
  9. Article
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  12. Review
  13. Article
  14. Article
  15. Article
  16. Genome organization and interaction with capsid protein in a multipartite RNA virus.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yibo ZhangCenter for Integrative Imaging, Hefei National Laboratory for Physical Sciences at the Microscale, and School of Life Sciences, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China.ORCID http://orcid.org/0000-0002-0643-987X
Wei LiuCenter for Integrative Imaging, Hefei National Laboratory for Physical Sciences at the Microscale, and School of Life Sciences, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China.
Zihang LiCalifornia NanoSystems Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095-7151, USA.ORCID http://orcid.org/0000-0002-4625-9283
Vinay KumarCalifornia NanoSystems Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095-7151, USA.ORCID http://orcid.org/0000-0002-5239-7156
Ana L Alvarez-CabreraCalifornia NanoSystems Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095-7151, USA.
Emily C LeibovitchViral Immunology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health (NIH), Bethesda, MD, 20892, USA.
Yanxiang CuiCalifornia NanoSystems Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095-7151, USA.ORCID http://orcid.org/0000-0002-8909-6576
Ye MeiState Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University (ECNU), Shanghai, 200062, China.ORCID http://orcid.org/0000-0002-3953-8508
Guo-Qiang BiCenter for Integrative Imaging, Hefei National Laboratory for Physical Sciences at the Microscale, and School of Life Sciences, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China.ORCID http://orcid.org/0000-0001-8735-3818
Steve JacobsonViral Immunology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health (NIH), Bethesda, MD, 20892, USA.
Z Hong ZhouCalifornia NanoSystems Institute, University of California, Los Angeles (UCLA), Los Angeles, CA, 90095-7151, USA. Hong.Zhou@ucla.edu.ORCID http://orcid.org/0000-0002-8373-4717
California NanoSystems Institute · USUniversity of Science and Technology of China · CNNational Institutes of Health · USEast China Normal University · CN

Funding

Genome Structure, Transcription and Packaging of dsRNA VirusesR01AI094386 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Z Hong ZHOU · 2012 to 2026
$6.0M
In situ atomic structures of the Kaposi's sarcoma-associated herpesvirus portal-terminase complex and glycoproteinsR01DE025567 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WU, TING-TING, ZHOU, Z HONG · 2016 to 2024
$4.0M
Structural basis of human cytomegalovirus replication within host cellsR01DE028583 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Z Hong ZHOU · 2019 to 2026
$3.2M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
NCRR NIH HHS S10 RR023057NIAID NIH HHS R01 AI094386NIDCR NIH HHS R01 DE025567NIDCR NIH HHS R01 DE028583NIGMS NIH HHS U24 GM116792NIH HHS S10 OD018111
6 · The paper itself

Abstract

Human herpesvirus 6B (HHV-6B) belongs to the β-herpesvirus subfamily of the Herpesviridae. To understand capsid assembly and capsid-tegument interactions, here we report atomic structures of HHV-6B capsid and capsid-associated tegument complex (CATC) obtained by cryoEM and sub-particle reconstruction. Compared to other β-herpesviruses, HHV-6B exhibits high similarity in capsid structure but organizational differences in its CATC (pU11 tetramer). 180 "VΛ"-shaped CATCs are observed in HHV-6B, distinguishing from the 255 "Λ"-shaped dimeric CATCs observed in murine cytomegalovirus and the 310 "Δ"-shaped CATCs in human cytomegalovirus. This trend in CATC quantity correlates with the increasing genomes sizes of these β-herpesviruses. Incompatible distances revealed by the atomic structures rationalize the lack of CATC's binding to triplexes Ta, Tc, and Tf in HHV-6B. Our results offer insights into HHV-6B capsid assembly and the roles of its tegument proteins, including not only the β-herpesvirus-specific pU11 and pU14, but also those conserved across all subfamilies of Herpesviridae.

Indexed as

CapsidCapsid ProteinsCryoelectron MicroscopyGenome, ViralHerpesvirus 6, HumanHumansMultiprotein ComplexesProtein BindingRoseolovirus InfectionsViral Matrix ProteinsCapsid ProteinsMultiprotein ComplexesViral Matrix Proteins

Identifiers

PMID31767868
PMCPMC6877594
OpenAlexW2989938215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.