Evidence map›Paper›PMID 31767858›Full record

ArticleNature communications2019

The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia.

Dimitrios Papaioannou, Andreas Petri, Oliver M Dovey, Sara Terreri, Eric Wang, Frances A Collins, Lauren A Woodward, Allison E Walker, Deedra Nicolet, Felice Pepe and 23 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 71 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 2 pooled it
8.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 2 syntheses or guidelines pooled it, 158 citations in OpenAlex.

  1. Pooled it
  2. Alternative splicing and cancer: a systematic review.Signal transduction and targeted therapy · 2021
    Pooled it
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. MALNC: a new mutant NPM1/IDH2Cancer gene therapy · 2025
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Noncanonical microprotein regulation of immunity.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  19. Review
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 9 institutions in 4 countries.

Dimitrios PapaioannouThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Andreas PetriCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-0425-5794
Oliver M DoveyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.
Sara TerreriInstitute of Genetics and Biophysics (IGB-ABT), National Council of Research (CNR), Naples, Italy.
Eric WangDepartment of Pathology, New York University School of Medicine, New York, NY, USA.
Frances A CollinsThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Lauren A WoodwardDepartment of Molecular Genetics, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Allison E WalkerThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Deedra NicoletThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Felice PepeThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.ORCID http://orcid.org/0000-0001-6507-9993
Prasanthi KumchalaThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Marius BillThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Christopher J WalkerThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Malith KarunasiriThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Krzysztof MrózekThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Miranda L GardnerThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Virginia CamilottoWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.
Nina ZitzerThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Jonathan L CooperWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.
Xiongwei CaiCancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, OH, USA.
Xiaoqing Rong-MullinsThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-2122-552X
Jessica KohlschmidtThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Kellie J ArcherThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-1555-5781
Michael A FreitasThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Yi ZhengCancer and Blood Diseases Institute, Cincinnati Children's Hospital Medical Center, University of Cincinnati, Cincinnati, OH, USA.
Robert J LeeDivision of Pharmaceutics, College of Pharmacy, The Ohio State University, Columbus, OH, USA.
Iannis AifantisDepartment of Pathology, New York University School of Medicine, New York, NY, USA.
George VassiliouWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0003-4337-8022
Guramrit SinghDepartment of Molecular Genetics, Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-5283-9540
Sakari KauppinenCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, Copenhagen, Denmark.
Clara D BloomfieldThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.ORCID http://orcid.org/0000-0001-5465-7591
Adrienne M DorranceThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA.
Ramiro GarzonThe Ohio State University, Comprehensive Cancer Center, Columbus, OH, USA. ramiro.garzon@osumc.edu.
The Ohio State University · USAalborg University · DKAlliance for Clinical Trials in Oncology · USCincinnati Children's Hospital Medical Center · USNew York University · USWellcome Sanger Institute · GBCambridge University Hospitals NHS Foundation Trust · GBInstitute of Genetics and Biophysics · ITUniversity of Pavia · IT

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
THE ALLIANCE NCTN BIOREPOSITORY AND BIOSPECIMEN RESOURCEU24CA196171 · NCI · WASHINGTON UNIVERSITY · PI Mine Cicek, Wendy Frankel · 2015 to 2026
$35.0M
ITSC for Leukemia: Novel Molecular strategies for NCTN "Individualized" TherapiesUG1CA233338 · NCI · UNIVERSITY OF CINCINNATI · PI BYRD, JOHN C. · 2019 to 2025
$4.5M
ITSC for Leukemia: Novel Molecular Strategies for NCTN: "Individualized" TherapieU10CA180861 · NCI · OHIO STATE UNIVERSITY · PI BLOOMFIELD, CLARA D, MARCUCCI, GUIDO · 2014 to 2018
$3.4M
Long non-coding RNAs in hematopoiesis and blood malignancyR01CA194923 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS · 2015 to 2019
$2.3M
Acquisition of a Next Generation Orbitrap MSS10OD018056 · OD · OHIO STATE UNIVERSITY · PI FREITAS, MICHAEL A. · 2014 to 2014
$573k
Cancer Research UK 23015Medical Research Council MC_PC_12009NCI NIH HHS P30 CA016058NCI NIH HHS R01 CA194923NCI NIH HHS U10 CA180861NCI NIH HHS U24 CA196171NCI NIH HHS UG1 CA233338NIH HHS S10 OD018056
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are important regulatory molecules that are implicated in cellular physiology and pathology. In this work, we dissect the functional role of the HOXB-AS3 lncRNA in patients with NPM1-mutated (NPM1mut) acute myeloid leukemia (AML). We show that HOXB-AS3 regulates the proliferative capacity of NPM1mut AML blasts in vitro and in vivo. HOXB-AS3 is shown to interact with the ErbB3-binding protein 1 (EBP1) and guide EBP1 to the ribosomal DNA locus. Via this mechanism, HOXB-AS3 regulates ribosomal RNA transcription and de novo protein synthesis. We propose that in the context of NPM1 mutations, HOXB-AS3 overexpression acts as a compensatory mechanism, which allows adequate protein production in leukemic blasts.

Indexed as

MutationTranscription, GeneticAcute DiseaseAnimalsCell Line, TumorCell ProliferationHEK293 CellsHumansK562 CellsLeukemia, MyeloidMice, Inbred NODMice, KnockoutMice, SCIDNuclear ProteinsNucleophosminProtein BiosynthesisNPM1 protein, humanNpm1 protein, mouseNuclear ProteinsNucleophosminRNA, Long NoncodingRNA, Ribosomal

Identifiers

PMID31767858
PMCPMC6877618
OpenAlexW2991417598

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.