ArticleScientific data2019
A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis.
Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Orthologue inference-based enzyme mining for diversification of the anti-cancer evodiamine scaffold.Communications chemistry · 2026Article
- A pangenome insight into the genome divergence and flower color diversity among Rhododendron species.BMC genomics · 2026Article
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- From data to discovery: leveraging big data in plant natural products biosynthesis research.The Plant journal : for cell and molecular biology · 2025Review
- Genome assembly of Stewartia sinensis reveals origin and evolution of orphan genes in Theaceae.Communications biology · 2025Article
- Genomic vulnerability assessment reveals the potential benefits of adaptive introgression by mitigating the maladaptive risk of admixed populations.Forestry research · 2025Article
- Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla.Scientific data · 2024Article
- Cryptic divergences and repeated hybridizations within the endangered "living fossil" dove tree (Plant diversity · 2024Article
- Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color.Horticulture research · 2023Article
- A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae.GigaScience · 2022Article
- A Chromosome-Level Genome Assembly of the European Beech (Frontiers in genetics · 2021Article
- The draft genome assembly of the critically endangeredGigaByte (Hong Kong, China) · 2020Article
- A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis.Scientific data · 2019Article
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Authors and funding
11 authors.
Funding
Abstract
The deciduous Chinese tupelo (Nyssa sinensis Oliv.) is a popular ornamental tree for the spectacular autumn leaf color. Here, using single-molecule sequencing and chromosome conformation capture data, we report a high-quality, chromosome-level genome assembly of N. sinensis. PacBio long reads were de novo assembled into 647 polished contigs with a total length of 1,001.42 megabases (Mb) and an N50 size of 3.62 Mb, which is in line with genome sizes estimated using flow cytometry and the k-mer analysis. These contigs were further clustered and ordered into 22 pseudo-chromosomes based on Hi-C data, matching the chromosome counts in Nyssa obtained from previous cytological studies. In addition, a total of 664.91 Mb of repetitive elements were identified and a total of 37,884 protein-coding genes were predicted in the genome of N. sinensis. All data were deposited in publicly available repositories, and should be a valuable resource for genomics, evolution, and conservation biology.
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