Evidence map›Paper›PMID 31767757›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The extracellular DNA lattice of bacterial biofilms is structurally related to Holliday junction recombination intermediates.

Aishwarya Devaraj, John R Buzzo, Lauren Mashburn-Warren, Erin S Gloag, Laura A Novotny, Paul Stoodley, Lauren O Bakaletz, Steven D Goodman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 131 citations in OpenAlex.

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  14. Extracellular DNA-protein interactions.Current opinion in structural biology · 2024
    Review
  15. Journal of bacteriology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Biofilm · 2024
    Review
  20. Review

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Aishwarya DevarajCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205.
John R BuzzoCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205.
Lauren Mashburn-WarrenCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205.
Erin S GloagDepartment of Orthopedics, The Ohio State University, Columbus, OH 43210.ORCID 0000-0001-8895-3444
Laura A NovotnyCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205.
Paul StoodleyDepartment of Orthopedics, The Ohio State University, Columbus, OH 43210.
Lauren O BakaletzCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205.
Steven D GoodmanCenter for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH 43205; steven.goodman@nationwidechildrens.org.
Nationwide Children's Hospital · USThe Ohio State University · USUniversity of Southampton · GB

Funding

Novel immunotherapeutics for the management of otitis media due to H. influenzaeR01DC011818 · NIDCD · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI BAKALETZ, LAUREN O, GOODMAN, STEVEN D · 2011 to 2020
$5.4M
The role of Staphylococcus aureus aggregate formation in establishing biofilms in chronic orthopaedic periprosthetic joint infection.R01GM124436 · NIGMS · OHIO STATE UNIVERSITY · PI STOODLEY, PAUL · 2018 to 2021
$2.1M
NIDCD NIH HHS R01 DC011818NIGMS NIH HHS R01 GM124436
6 · The paper itself

Abstract

Extracellular DNA (eDNA) is a critical component of the extracellular matrix of bacterial biofilms that protects the resident bacteria from environmental hazards, which includes imparting significantly greater resistance to antibiotics and host immune effectors. eDNA is organized into a lattice-like structure, stabilized by the DNABII family of proteins, known to have high affinity and specificity for Holliday junctions (HJs). Accordingly, we demonstrated that the branched eDNA structures present within the biofilms formed by NTHI in the middle ear of the chinchilla in an experimental otitis media model, and in sputum samples recovered from cystic fibrosis patients that contain multiple mixed bacterial species, possess an HJ-like configuration. Next, we showed that the prototypic

Indexed as

BiofilmsDNA, CruciformExtracellular MatrixHolliday Junction ResolvasesRecombination, GeneticAnimalsBacterial ProteinsChinchillaDisease Models, AnimalDNA-Binding ProteinsDNA HelicasesEscherichia coli ProteinsOtitis MediaBacterial ProteinsDNA-Binding ProteinsDNA, CruciformDNA HelicasesEscherichia coli ProteinsHolliday junction DNA helicase, E coliHolliday Junction ResolvasesDNABII proteinsextracellular matrixHolliday junction resolvase

Identifiers

PMID31767757
PMCPMC6911203
OpenAlexW2989700493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.