Evidence map›Paper›PMID 31767698›Full record

ArticleAnnals of the rheumatic diseases2020

Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile.

Brian Skaug, Dinesh Khanna, William R Swindell, Monique E Hinchcliff, Tracy M Frech, Virginia D Steen, Faye N Hant, Jessica K Gordon, Ami A Shah, Lisha Zhu and 18 more

Abstract read
In one paragraph

Article in Annals of the rheumatic diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

  1. Trial
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  11. Review
  12. CAR-T cells in systemic sclerosis.Clinical rheumatology · 2026
    Review
  13. Review
  14. Association ofInternational journal of molecular sciences · 2026
    Article
  15. Article
  16. Article
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  18. Article
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  20. Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Brian SkaugDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA brian.a.skaug@uth.tmc.edu.ORCID 0000-0002-6689-4655
Dinesh KhannaScleroderma Program, Department of Internal Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0003-1412-4453
William R SwindellOhio University Heritage College of Osteopathic Medicine, Athens, Ohio, USA.
Monique E HinchcliffDepartment of Medicine, Section of Allergy, Rheumatology, and Immunology, Yale University, New Haven, Connecticut, USA.
Tracy M FrechDivision of Rheumatology, Department of Internal Medicine, University of Utah and Salt Lake Regional Veterans Affairs Medical Center, Salt Lake City, Utah, USA.
Virginia D SteenDivision of Rheumatology, Department of Medicine, MedStar Georgetown University Hospital, Washington, DC, USA.
Faye N HantDivision of Rheumatology and Immunology, Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA.
Jessica K GordonDepartment of Rheumatology, Hospital for Special Surgery, New York City, New York, USA.
Ami A ShahDivision of Rheumatology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Lisha ZhuSchool of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
W Jim ZhengSchool of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Jeffrey L BrowningDepartment of Microbiology, Section of Rheumatology, Boston University School of Medicine, Boston, Massachusetts, USA.
Alexander M S BarronDepartment of Microbiology, Section of Rheumatology, Boston University School of Medicine, Boston, Massachusetts, USA.
Minghua WuDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.ORCID 0000-0002-0388-2032
Sudha VisvanathanBoehringer Ingelheim Pharmaceuticals Inc, Ridgefield, Connecticut, USA.ORCID 0000-0002-1170-9272
Patrick BaumBoehringer Ingelheim International GmbH, Biberach, Germany.
Jennifer M FranksDepartment of Biomedical Data Science, Dartmouth College Geisel School of Medicine, Lebanon, New Hampshire, USA.ORCID 0000-0003-2400-5431
Michael L WhitfieldDepartment of Biomedical Data Science, Dartmouth College Geisel School of Medicine, Lebanon, New Hampshire, USA.
Victoria K ShanmugamDivision of Rheumatology, George Washington University School of Medicine and Health Sciences, Washington, DC, USA.
Robyn T DomsicDivision of Rheumatology and Clinical Immunology, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Flavia V CastelinoDivision of Rheumatology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Elana J BernsteinDivision of Rheumatology, Vagelos College of Physicians and Surgeons, New York City, New York, USA.
Nancy WareingDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Marka A LyonsDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Jun YingDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Julio CharlesDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Maureen D MayesDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Shervin AssassiDivision of Rheumatology and Clinical Immunogenetics, University of Texas Health Science Center at Houston, Houston, Texas, USA.ORCID 0000-0002-8059-9978

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Convalescent Plasma to Limit Coronavirus Associated ComplicationsUL1TR003167 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KARP, DANIEL D, MCPHERSON, DAVID D · 2019 to 2023
$45.3M
Translational studies for identifying and targeting novel pathways in systemic sclerosis pathogenesisP50AR060780 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TROJANOWSKA, MARIA · 2011 to 2021
$14.9M
CFlm25 mediated alternative polyadenylation regulates fibrosis in systemic sclerosisR01AR073284 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, MILLS, TINGTING WENG · 2019 to 2023
$1.7M
Outcomes Research in Rheumatic DiseasesK24AR063120 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KHANNA, DINESH · 2012 to 2022
$1.6M
Quantitative Biomedical Sciences at DartmouthT32LM012204 · NLM · DARTMOUTH COLLEGE · PI TOSTESON, TOR D · 2016 to 2020
$876k
Screening Chest CT to Detect Interstitial Lung Disease in Systemic SclerosisK23AR075112 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BERNSTEIN, ELANA · 2019 to 2023
$794k
Systemic Sclerosis-Associated Interstitial Lung Disease Response IndexR01AR070470 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KHANNA, DINESH · 2017 to 2019
$642k
NCATS NIH HHS UL1 TR001863NCATS NIH HHS UL1 TR003167NIAMS NIH HHS K23 AR075112NIAMS NIH HHS K24 AR063120NIAMS NIH HHS P50 AR060780NIAMS NIH HHS R01 AR070470NIAMS NIH HHS R01 AR073284NLM NIH HHS T32 LM012204
6 · The paper itself

Abstract

objectivesDetermine global skin transcriptome patterns of early diffuse systemic sclerosis (SSc) and how they differ from later disease.

methodsSkin biopsy RNA from 48 patients in the Prospective Registry for Early Systemic Sclerosis (PRESS) cohort (mean disease duration 1.3 years) and 33 matched healthy controls was examined by next-generation RNA sequencing. Data were analysed for cell type-specific signatures and compared with similarly obtained data from 55 previously biopsied patients in Genetics versus Environment in Scleroderma Outcomes Study cohort with longer disease duration (mean 7.4 years) and their matched controls. Correlations with histological features and clinical course were also evaluated.

resultsSSc patients in PRESS had a high prevalence of M2 (96%) and M1 (94%) macrophage and CD8 T cell (65%), CD4 T cell (60%) and B cell (69%) signatures. Immunohistochemical staining of immune cell markers correlated with the gene expression-based immune cell signatures. The prevalence of immune cell signatures in early diffuse SSc patients was higher than in patients with longer disease duration. In the multivariable model, adaptive immune cell signatures were significantly associated with shorter disease duration, while fibroblast and macrophage cell type signatures were associated with higher modified Rodnan Skin Score (mRSS). Immune cell signatures also correlated with skin thickness progression rate prior to biopsy, but did not predict subsequent mRSS progression.

conclusionsSkin in early diffuse SSc has prominent innate and adaptive immune cell signatures. As a prominently affected end organ, these signatures reflect the preceding rate of disease progression. These findings could have implications in understanding SSc pathogenesis and clinical trial design.

Indexed as

Adaptive ImmunityAdultBiomarkersBiopsyFemaleHigh-Throughput Nucleotide SequencingHumansImmunity, InnateMaleMiddle AgedMultivariate AnalysisProspective StudiesRegistriesRegression AnalysisScleroderma, DiffuseSequence Analysis, RNABiomarkersautoimmunityinflammationsystemic Sclerosis

Identifiers

PMID31767698
PMCPMC7386329

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.