Evidence map›Paper›PMID 31766719›Full record

ArticleViruses2019

Identification of a Novel Adélie Penguin Circovirus at Cape Crozier (Ross Island, Antarctica).

Virginia Morandini, Katie M Dugger, Grant Ballard, Megan Elrod, Annie Schmidt, Valeria Ruoppolo, Amélie Lescroël, Dennis Jongsomjit, Melanie Massaro, Jean Pennycook and 5 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 4 countries.

Virginia MorandiniOregon Cooperative Fish and Wildlife Research Unit, Department of Fisheries and Wildlife, Oregon State University, 104 Nash Hall, Corvallis, OR 97331, USA.
Katie M DuggerUS Geological Survey, Oregon Cooperative Fish and Wildlife Research Unit, Department of Fisheries and Wildlife, Oregon State University, 104 Nash Hall, Corvallis, OR 97331, USA.ORCID 0000-0002-4148-246X
Grant BallardPoint Blue Conservation Science, Petaluma, CA 94954, USA.
Megan ElrodPoint Blue Conservation Science, Petaluma, CA 94954, USA.ORCID 0000-0003-3200-9045
Annie SchmidtPoint Blue Conservation Science, Petaluma, CA 94954, USA.
Valeria RuoppoloLaboratório de Patologia Comparada de Animais Selvagens (LAPCOM), Departamento de Patologia, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo 05508-060, Brazil.ORCID 0000-0001-9945-0463
Amélie LescroëlPoint Blue Conservation Science, Petaluma, CA 94954, USA.
Dennis JongsomjitPoint Blue Conservation Science, Petaluma, CA 94954, USA.
Melanie MassaroSchool of Environmental Sciences, Institute for Land, Water and Society, Charles Sturt University, Albury 2678, Australia.
Jean PennycookHT Harvey and Associates, Los Gatos, CA 95032, USA.
Gerald L KooymanScholander Hall, Scripps Institution of Oceanography, University of California, La Jolla, San Diego, CA 92093-0204, USA.
Kara SchmidlinThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
Simona KrabergerThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
David G AinleyHT Harvey and Associates, Los Gatos, CA 95032, USA.
Arvind VarsaniThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ 85287-5001, USA.ORCID 0000-0003-4111-2415
Point Blue Conservation Science · USArizona State University · USH.T. Harvey & Associates · USCharles Sturt University · AUOregon Department of Fish and Wildlife · USScripps Institution of Oceanography · USUnited States Geological Survey · USUniversidade de São Paulo · BRUniversity of Cape Town · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the causes of disease in Antarctic wildlife is crucial, as many of these species are already threatened by environmental changes brought about by climate change. In recent years, Antarctic penguins have been showing signs of an unknown pathology: a feather disorder characterised by missing feathers, resulting in exposed skin. During the 2018-2019 austral summer breeding season at Cape Crozier colony on Ross Island, Antarctica, we observed for the first time an Adélie penguin chick missing down over most of its body. A guano sample was collected from the nest of the featherless chick, and using high-throughput sequencing, we identified a novel circovirus. Using abutting primers, we amplified the full genome, which we cloned and Sanger-sequenced to determine the complete genome of the circovirus. The Adélie penguin guano-associated circovirus genome shares <67% genome-wide nucleotide identity with other circoviruses, representing a new species of circovirus; therefore, we named it penguin circovirus (PenCV). Using the same primer pair, we screened 25 previously collected cloacal swabs taken at Cape Crozier from known-age adult Adélie penguins during the 2014-2015 season, displaying no clinical signs of feather-loss disorder. Three of the 25 samples (12%) were positive for a PenCV, whose genome shared >99% pairwise identity with the one identified in 2018-2019. This is the first report of a circovirus associated with a penguin species. This circovirus could be an etiological agent of the feather-loss disorder in Antarctic penguins.

Indexed as

AnimalsAntarctic RegionsBird DiseasesBreedingCircoviridae InfectionsCircovirusClimate ChangeFeathersFemaleGenome, ViralIslandsMalePhylogenySeasonsSpheniscidaeAntarcticaCape CrozierCircoviridaePygoscelis adeliaeRoss Island

Identifiers

PMID31766719
PMCPMC6950389
OpenAlexW2990089686

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.