Evidence map›Paper›PMID 31766658›Full record

ArticleCancers2019

Mechanistic Signatures of Human Papillomavirus Insertions in Anal Squamous Cell Carcinomas.

Adeline Morel, Cindy Neuzillet, Maxime Wack, Sonia Lameiras, Sophie Vacher, Marc Deloger, Nicolas Servant, David Veyer, Hélène Péré, Odette Mariani and 8 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Immunotherapy in Anal Cancer.Current oncology (Toronto, Ont.) · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Observational
  13. Article
  14. Article
  15. Connecting METTL3 and intratumoural CD33Journal of translational medicine · 2020
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 1 country.

Adeline MorelInstitut Curie, Pharmacogenomic Unit, 26 rue d'Ulm, 75248 Paris, France.ORCID 0000-0002-5543-8929
Cindy NeuzilletInstitut Curie, Medical Oncology Department, Versailles Saint-Quentin University, 35 rue Dailly, 92210 Saint-Cloud, France.
Maxime WackDépartement d'Informatique Médicale, Biostatistiques et Santé Publique, Hôpital Européen Georges Pompidou, and Assistance Publique-Hôpitaux de Paris, 75015 Paris, France.
Sonia LameirasInstitut Curie, Genomics of Excellence (ICGex) Platform, PSL Research University, 26 rue d'Ulm, 75248 Paris CEDEX 05, France.
Sophie VacherInstitut Curie, Pharmacogenomic Unit, 26 rue d'Ulm, 75248 Paris, France.ORCID 0000-0002-0042-6023
Marc DelogerInstitut Curie, Bioinformatics and Computational Systems Biology of Cancer, PSL Research University, Mines Paris Tech, INSERM U900, 75248 Paris, France.ORCID 0000-0002-6352-101X
Nicolas ServantInstitut Curie, Bioinformatics and Computational Systems Biology of Cancer, PSL Research University, Mines Paris Tech, INSERM U900, 75248 Paris, France.
David VeyerLaboratoire de virologie, Hôpital Européen Georges Pompidou, and Assistance Publique-Hôpitaux de Paris, 75015 Paris, France.
Hélène PéréLaboratoire de virologie, Hôpital Européen Georges Pompidou, and Assistance Publique-Hôpitaux de Paris, 75015 Paris, France.
Odette MarianiInstitut Curie, Centre de Ressources Biologiques, 26 rue d'Ulm, 75248 Paris, France.
Sylvain BaulandeInstitut Curie, Genomics of Excellence (ICGex) Platform, PSL Research University, 26 rue d'Ulm, 75248 Paris CEDEX 05, France.ORCID 0000-0003-3104-1684
Roman RouzierInstitut Curie, Medical Oncology Department, Versailles Saint-Quentin University, 35 rue Dailly, 92210 Saint-Cloud, France.
Maud KamalInstitut Curie, Department of Drug Development and Innovation (D3i), Institut Curie Paris & Saint Cloud, 75248 Paris, France.
Elsy El AlamInstitut Curie, Pathology Department, 35 rue Dailly, 92210 Saint-Cloud, France.
Emmanuelle JeannotInstitut Curie, Pathology Department, 26 rue d'Ulm, 75248 Paris, France.ORCID 0000-0002-4851-7450
Alain NicolasInstitut Curie, PSL Research University, CNRS UMR3244, 75248 Paris, France.ORCID 0000-0002-5606-7808
Ivan BiècheInstitut Curie, Pharmacogenomic Unit, 26 rue d'Ulm, 75248 Paris, France.ORCID 0000-0002-2430-5429
Wulfran CacheuxInstitut Curie, Medical Oncology Department, Versailles Saint-Quentin University, 35 rue Dailly, 92210 Saint-Cloud, France.
Institut Curie · FRInserm · FRAssistance Publique – Hôpitaux de Paris · FRUniversité Paris Sciences et Lettres · FRCentre National de la Recherche Scientifique · FRDélégation Paris 5 · FRHôpital Privé Jacques Cartier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of human papillomavirus (HPV) in anal squamous cell carcinoma (ASCC) carcinogenesis has been clearly established, involving the expression of viral oncoproteins and optional viral DNA integration into the host genome. In this article, we describe the various mechanisms and sites of HPV DNA insertion and assess their prognostic and predictive value in a large series of patients with HPV-positive ASCC with long-term follow-up. We retrospectively analyzed 96 tumor samples from 93 HPV-positive ASCC patients using the Capture-HPV method followed by Next-Generation Sequencing, allowing determination of HPV genotype and identification of the mechanisms and sites of viral genome integration. We identified five different mechanistic signatures of HPV insertions. The distribution of HPV signatures differed from that previously described in HPV-positive cervical carcinoma (

Indexed as

anal cancerHPVintegrationNFIXprognostic factor

Identifiers

PMID31766658
PMCPMC6966520
OpenAlexW2991450072

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.