Evidence map›Paper›PMID 31762537›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2019

Machine learning for segmenting cells in corneal endothelium images.

Chaitanya Kolluru, Beth A Benetz, Naomi Joseph, Harry J Menegay, Jonathan H Lass, David Wilson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  10. An automatic approach for cell detection and segmentation of corneal endothelium in specular microscope.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2022
    Article
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  13. Review
  14. Article
  15. Artificial intelligence in cornea and ocular surface diseases.Saudi journal of ophthalmology : official journal of the Saudi Ophthalmological Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chaitanya KolluruDepartment of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Beth A BenetzDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University and University Hospitals Eye Institute, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Naomi JosephDepartment of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Harry J MenegayDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University and University Hospitals Eye Institute, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Jonathan H LassDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University and University Hospitals Eye Institute, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
David WilsonDepartment of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
Case Western Reserve University · US

Funding

Interdisciplinary Biomedical Imaging Training ProgramT32EB007509 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI DAVID Lynn WILSON, Xin Yu · 2007 to 2026
$5.6M
Image analytics prediction of corneal keratoplasty failureR21EY029498 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI BENETZ, BETH ANN, WILSON, DAVID LYNN · 2018 to 2019
$440k
BIOMEDICAL ENGINEERING RESEARCH FACILITIESC06RR012463 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI KUTINA, KENNETH L · 1997 to 1997
–
NCRR NIH HHS C06 RR012463NEI NIH HHS R21 EY029498NIBIB NIH HHS T32 EB007509
6 · The paper itself

Abstract

Images of the endothelial cell layer of the cornea can be used to evaluate corneal health. Quantitative biomarkers extracted from these images such as cell density, coefficient of variation of cell area, and cell hexagonality are commonly used to evaluate the status of the endothelium. Currently, fully-automated endothelial image analysis systems in use often give inaccurate results, while semi-automated methods, requiring trained image analysis readers to identify cells manually, are both challenging and time-consuming. We are investigating two deep learning methods to automatically segment cells in such images. We compare the performance of two deep neural networks, namely U-Net and SegNet. To train and test the classifiers, a dataset of 130 images was collected, with expert reader annotated cell borders in each image. We applied standard training and testing techniques to evaluate pixel-wise segmentation performance, and report corresponding metrics such as the Dice and Jaccard coefficients. Visual evaluation of results showed that most pixel-wise errors in the U-Net were rather non-consequential. Results from the U-Net approach are being applied to create endothelial cell segmentations and quantify important morphological measurements for evaluating cornea health.

Indexed as

corneadeep learningendothelial cell segmentation

Identifiers

PMID31762537
PMCPMC6874224
OpenAlexW2921435479

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.