Evidence map›Paper›PMID 31760946›Full record

ArticleBMC bioinformatics2019

Using deep reinforcement learning to speed up collective cell migration.

Hanxu Hou, Tian Gan, Yaodong Yang, Xianglei Zhu, Sen Liu, Weiming Guo, Jianye Hao

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Modern deep learning in bioinformatics.Journal of molecular cell biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hanxu HouSchool of Electrical Engineering & Intelligentization, Dongguan University of Technology, No.1 University Road, DongGuan, 523808, China.
Tian GanCollege of Intelligence and Computing, TianJin University, No.135 Yaguan Road, TianJin, 300350, China.
Yaodong YangCollege of Intelligence and Computing, TianJin University, No.135 Yaguan Road, TianJin, 300350, China.
Xianglei ZhuAutomotive Data Center, CATARC, No.69 Xianfeng Road, TianJin, 300300, China.
Sen LiuAutomotive Data Center, CATARC, No.69 Xianfeng Road, TianJin, 300300, China.
Weiming GuoAutomotive Data Center, CATARC, No.69 Xianfeng Road, TianJin, 300300, China.
Jianye HaoSchool of Electrical Engineering & Intelligentization, Dongguan University of Technology, No.1 University Road, DongGuan, 523808, China. haojianye@gmail.com.
China Automotive Technology and Research Center · CNDongguan University of Technology · CNTianjin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCollective cell migration is a significant and complex phenomenon that affects many basic biological processes. The coordination between leader cell and follower cell affects the rate of collective cell migration. However, there are still very few papers on the impacts of the stimulus signal released by the leader on the follower. Tracking cell movement using 3D time-lapse microscopy images provides an unprecedented opportunity to systematically study and analyze collective cell migration.

resultsRecently, deep reinforcement learning algorithms have become very popular. In our paper, we also use this method to train the number of cells and control signals. By experimenting with single-follower cell and multi-follower cells, it is concluded that the number of stimulation signals is proportional to the rate of collective movement of the cells. Such research provides a more diverse approach and approach to studying biological problems.

conclusionTraditional research methods are always based on real-life scenarios, but as the number of cells grows exponentially, the research process is too time consuming. Agent-based modeling is a robust framework that approximates cells to isotropic, elastic, and sticky objects. In this paper, an agent-based modeling framework is used to establish a simulation platform for simulating collective cell migration. The goal of the platform is to build a biomimetic environment to demonstrate the importance of stimuli between the leading and following cells.

Indexed as

Cell MovementAlgorithmsAnimalsCellsComputer SimulationHumansTime-Lapse ImagingCollective migrationDeep reinforcement learningLeader-follower mechanism

Identifiers

PMID31760946
PMCPMC6876083
OpenAlexW2991505451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.