Evidence map›Paper›PMID 31760552›Full record

ArticlePhotosynthesis research2020

Far-red light allophycocyanin subunits play a role in chlorophyll d accumulation in far-red light.

Donald A Bryant, Gaozhong Shen, Gavin M Turner, Nathan Soulier, Tatiana N Laremore, Ming-Yang Ho

Abstract read
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In one paragraph

Article in Photosynthesis research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

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  20. Biosynthesis of the modified tetrapyrroles-the pigments of life.The Journal of biological chemistry · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Donald A BryantDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA. dab14@psu.edu.ORCID http://orcid.org/0000-0003-2782-5988
Gaozhong ShenDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
Gavin M TurnerDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
Nathan SoulierDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
Tatiana N LaremoreProteomics and Mass Spectrometry Core Facility, Huck Institute for the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA.
Ming-Yang HoDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
Pennsylvania State University · US

Funding

National Science Foundation MCB-1613022U. S. Department of Energy DE-SC 0001035
6 · The paper itself

Abstract

Some terrestrial cyanobacteria acclimate to and utilize far-red light (FRL; λ = 700-800 nm) for oxygenic photosynthesis, a process known as far-red light photoacclimation (FaRLiP). A conserved, 20-gene FaRLiP cluster encodes core subunits of Photosystem I (PSI) and Photosystem II (PSII), five phycobiliprotein subunits of FRL-bicylindrical cores, and enzymes for synthesis of chlorophyll (Chl) f and possibly Chl d. Deletion mutants for each of the five apc genes of the FaRLiP cluster were constructed in Synechococcus sp. PCC 7335, and all had similar phenotypes. When the mutants were grown in white (WL) or red (RL) light, the cells closely resembled the wild-type (WT) strain grown under the same conditions. However, the WT and mutant strains were very different when grown under FRL. Mutants grown in FRL were unable to assemble FRL-bicylindrical cores, were essentially devoid of FRL-specific phycobiliproteins, but retained RL-type phycobilisomes and WL-PSII. The transcript levels for genes of the FaRLiP cluster in the mutants were similar to those in WT. Surprisingly, the Chl d contents of the mutant strains were greatly reduced (~ 60-99%) compared to WT and so were the levels of FRL-PSII. We infer that Chl d may be essential for the assembly of FRL-PSII, which does not accumulate to normal levels in the mutants. We further infer that the cysteine-rich subunits of FRL allophycocyanin may either directly participate in the synthesis of Chl d or that FRL bicylindrical cores stabilize FRL-PSII to prevent loss of Chl d.

Indexed as

LightChlorophyllGene Expression Regulation, BacterialGenes, BacterialModels, MolecularMultigene FamilyMutationPhycobilisomesPhycocyaninProteomicsSpectrometry, FluorescenceSynechococcusallophycocyaninChlorophyllchlorophyll dchlorophyll fPhycobilisomesPhycocyaninChlorophyll biosynthesisCyanobacteriaFar-red light photoacclimationPhotosynthesisPhycobiliproteinsPhycobilisomes

Identifiers

PMID31760552
OpenAlexW2991563887

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.