Evidence map›Paper›PMID 31758832›Full record

ArticleJournal of thrombosis and haemostasis : JTH2020

Subcellular localization of Rap1 GTPase activator CalDAG-GEFI is orchestrated by interaction of its atypical C1 domain with membrane phosphoinositides.

Muzaddid Sarker, Ardeshir Goliaei, Florence Golesi, Marjorie Poggi, Aaron A Cook, Mohammad A I Khan, Brenda R Temple, Lucia Stefanini, Matthias Canault, Wolfgang Bergmeier and 1 more

Abstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Integration of Rap1 and Calcium Signaling.International journal of molecular sciences · 2020
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Muzaddid SarkerDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Ardeshir GoliaeiDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Florence GolesiAix Marseille University, INSERM, INRA, Marseille, France.
Marjorie PoggiAix Marseille University, INSERM, INRA, Marseille, France.
Aaron A CookDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Mohammad A I KhanDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Brenda R TempleDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Lucia StefaniniDepartment of Internal Medicine and Medical Specialties, Sapienza University of Rome, Rome, Italy.
Matthias CanaultAix Marseille University, INSERM, INRA, Marseille, France.ORCID 0000-0002-7880-5250
Wolfgang BergmeierDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-1211-8861
Sharon L CampbellDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Project 4: The role of codon bias in RAS tumorigenesisP01CA203657 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 2016 to 2020
$7.9M
Small GTPases in the biology of platelets and megakaryocytesR35HL144976 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERGMEIER, WOLFGANG · 2019 to 2025
$5.4M
Structure and Mechanism of G-proteins and cell adhesion proteins in regulation of cell growth and motilityR35GM134962 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Sharon L Campbell · 2020 to 2026
$4.2M
Mechanisms of vinculin activation and force transmissionR01GM115597 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CAMPBELL, SHARON L · 2016 to 2019
$1.6M
NCI NIH HHS P01 CA203657NCI NIH HHS P30 CA016086NHLBI NIH HHS R35 HL144976NIGMS NIH HHS R01 GM115597NIGMS NIH HHS R35 GM134962NIH HHS 1R01GM115597NIH HHS 1R35 HL144976-01NIH HHS P30 CA016086NIH HHS PO1 CA203657
6 · The paper itself

Abstract

backgroundThe small GTPase Rap1 and its guanine nucleotide exchange factor, CalDAG-GEFI (CDGI), are critical for platelet function and hemostatic plug formation. CDGI function is regulated by a calcium binding EF hand regulatory domain and an atypical C1 domain with unknown function.

objectiveHere, we investigated whether the C1 domain controls CDGI subcellular localization, both in vitro and in vivo.

methodsCDGI interaction with phosphoinositides was studied by lipid co-sedimentation assays and molecular dynamics simulations. Cellular localization of CDGI was studied in heterologous cells by immunofluorescence and subcellular fractionation assays.

resultsLipid co-sedimentation studies demonstrated that the CDGI C1 domain associates with membranes through exclusive recognition of phosphoinositides, phosphatidylinositol (4,5)-biphosphate (PIP2) and phosphatidylinositol (3,4,5)-triphosphate (PIP3). Molecular dynamics simulations identified a phospholipid recognition motif consisting of residues exclusive to the CDGI C1 domain. Mutation of those residues abolished co-sedimentation of the C1 domain with lipid vesicles and impaired membrane localization of CDGI in heterologous cells.

conclusionOur studies identify a novel interaction between an atypical C1 domain and phosphatidylinositol (4,5)-biphosphate and phosphatidylinositol (3,4,5)-triphosphate in cellular membranes, which is critical for Rap1 signaling in health and disease.

Indexed as

GTP Phosphohydrolase ActivatorsPhosphatidylinositolsGTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsSignal TransductionGTP Phosphohydrolase ActivatorsGTP PhosphohydrolasesGuanine Nucleotide Exchange FactorsPhosphatidylinositolsC1 domainCalDAG-GEFmembraneplateletthrombosis

Identifiers

PMID31758832
PMCPMC7050387

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.