Evidence map›Paper›PMID 31758512›Full record

ArticleJournal of assisted reproduction and genetics2019

Karyomapping in preimplantation genetic testing for β-thalassemia combined with HLA matching: a systematic summary.

Jing Wang, Bao-Min Lu, Rong Li, Jing Guo, Yan Xu, Jia-Fu Pan, Yan-Hong Zeng, Can-Quan Zhou, Yan-Wen Xu

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. An Incidental Detection of a Rare UPD in SNP-Array Based PGT-SR: A Case Report.Reproductive sciences (Thousand Oaks, Calif.) · 2024
    Article
  7. [Genetic counseling for hearing loss today].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2024
    Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jing WangReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Bao-Min LuReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Rong LiReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Jing GuoReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Yan XuReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Jia-Fu PanReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Yan-Hong ZengReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Can-Quan ZhouReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China.
Yan-Wen XuReproductive Medicine Center, The First Affiliated Hospital, Sun Yat-sen University, Guangdong, China. xuyanwen@live.cn.
Sun Yat-sen University · CNThe First Affiliated Hospital, Sun Yat-sen University · CN

Funding

Guangdong Province Science and Technology Project 2016A020218008Guangzhou Science and Technology Project 201804020087National Key Research and Development Program 2018YFC1003102National Natural Science Foundation of China 81771588
6 · The paper itself

Abstract

purposeTo investigate the validity, accuracy, and clinical outcomes of Karyomapping in preimplantation genetic testing (PGT) for β-thalassemia combined with human leukocyte antigen (HLA) matching.

methodsA total of 128 cycles from January 2014 to December 2017 were identified, and 1205 embryos were biopsied. The case group included 88 cycles using Karyomapping for PGT-HLA, compared with 40 cycles using polymerase chain reaction-short tandem repeat (PCR-STR) as the control group.

resultsThere were significant differences in the HLA matching rate (21.34 vs. 14.37%), the matched transferable embryo rate (9.79 vs. 14.07%), the clinical pregnancy rate (65.08 vs. 41.86%), and the spontaneous miscarriage rate (2.44 vs. 22.22%) between the case and control groups. In the case group, nearly 1/3 (33.37%) of the embryos showed aneuploidy. According to the results of single nucleotide polymorphism (SNP) haplotype analysis, the recombination rates of HBB (hemoglobin subunit beta) and HLA were 11.46% and 5.61% respectively. HLA gene recombination was mostly distributed between HLA-A and HLA-B and the downstream region of HLA-DQB1. In addition, STR analysis could be considered in the case of copy-neutral loss of heterozygosity (LOH) in the region where the HLA gene is located.

conclusionKaryomapping contributes to accurate selection of matched embryos, along with aneuploidy screening. However, STRs assist identification in cases of LOH in the target region.

Indexed as

Preimplantation DiagnosisAdultbeta-ThalassemiaBiopsyEmbryo TransferFemaleHemoglobin SubunitsHLA-A AntigensHLA-B AntigensHLA-DQ beta-ChainsHumansKaryotypingLoss of HeterozygosityPregnancyPregnancy RateHemoglobin SubunitsHLA-A AntigensHLA-B AntigensHLA-DQB1 antigenHLA-DQ beta-ChainsGenetic testingHLA matchingKaryomappingPreimplantationβ-Thalassemia

Identifiers

PMID31758512
PMCPMC6911139
OpenAlexW2990551135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.