Evidence map›Paper›PMID 31758407›Full record

ArticlePathology oncology research : POR2020

Targeted Mutational Profiling and a Powerful Risk Score as Additional Tools for the Diagnosis of Papillary Thyroid Cancer.

Barbara Kocsis-Deák, Kristóf Árvai, Bernadett Balla, Bálint Tóbiás, Andrea Kohánka, Balázs Járay, János Horányi, János Podani, István Takács, Zsuzsanna Putz and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Pathology oncology research : POR, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Barbara Kocsis-Deák1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary. kocsisd.barbi@gmail.com.ORCID http://orcid.org/0000-0003-0448-0235
Kristóf ÁrvaiPentaCore Laboratory, Budapest, Hungary.
Bernadett Balla1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
Bálint TóbiásPentaCore Laboratory, Budapest, Hungary.
Andrea Kohánka1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
Balázs Járay2nd Department of Pathology, Semmelweis University, Budapest, Hungary.
János Horányi1st Department of Surgery, Semmelweis University, Budapest, Hungary.
János PodaniBiological Institute, Eötvös Loránd University, Budapest, Hungary.
István Takács1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
Zsuzsanna Putz1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
János Kósa1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
Péter Lakatos1st Department of Internal Medicine, Semmelweis University, Korányi Sándor Street 2/a, Budapest, 1083, Hungary.
Semmelweis University · HUEötvös Loránd University · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nowadays, the complementary diagnostics based on the suspicious thyroid lesion specific mutational state analysis is indispensable in the clinical practice. We aimed to test and validate our novel 568-mutational hotspot panel (23 cancer-related genes) on papillary thyroid cancers (PTCs) and their tumor-free pairs to find the most powerful mutation pattern related to PTC. The sequencing method was carried on with Ion Torrent PGM on 67 thyroid tissue samples. The most commonly detected mutation was the BRAF c.1799 T > A in all non-classical PTC cases. We utilized a multivariate statistical method (CVA) to determine a discrimination score based on mutational data array and to assess malignancy risk. Based on variants, the BRAF gene has by far the highest indicative power, followed by TSHR and APC. We highlighted novel aspects of the mutational profile and genetic markers of PTC. CVA has correctly assigned most of the samples based on the mutation frequencies and different variables of the selected genes, with high analytical probabilities. The final goal is to set up a new comprehensive rule-in and rule-out test to support the clinical decision making mainly in inconclusive fine-needle aspiration biopsy cases.

Indexed as

MutationAdultAgedAged, 80 and overBiomarkers, TumorFemaleHumansMaleMiddle AgedMultivariate AnalysisMutation RateRiskThyroid Cancer, PapillaryThyroid NeoplasmsBiomarkers, TumorMultivariate statistical methodNew hotspot panelNext generation sequencingPapillary thyroid cancerRisk score

Identifiers

PMID31758407
PMCPMC7109166
OpenAlexW2989786973

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.