Evidence map›Paper›PMID 31757985›Full record

ArticleScientific reports2019

Differentially Expressed Genes between Carrot Petaloid Cytoplasmic Male Sterile and Maintainer during Floral Development.

Bo Liu, Chenggang Ou, Shumin Chen, Qiongwen Cao, Zhiwei Zhao, Zengjian Miao, Xiaoping Kong, Feiyun Zhuang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Bo LiuKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China.
Chenggang OuKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China.
Shumin ChenKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China.
Qiongwen CaoKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China.
Zhiwei ZhaoKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China.
Zengjian MiaoXining Institute of Vegetables, Xining, No. 4 Weisan Road, Biological Industry Park, Xining, 810016, Qinghai, China.
Xiaoping KongXining Institute of Vegetables, Xining, No. 4 Weisan Road, Biological Industry Park, Xining, 810016, Qinghai, China.
Feiyun ZhuangKey Laboratory of Horticultural Crop Biology and Germplasm Innovation, Ministry of Agriculture; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Nanda Street, Zhongguan Cun, Haidian District, Beijing, 100081, China. zhuangfeiyun@caas.cn.
Ministère de l'Agriculture et de la Souveraineté alimentaire · FRInstitute of Vegetables and Flowers · CNMinistry of Agriculture and Agro Based Industry · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Petaloid cytoplasmic male sterility (CMS) is a maternally inherited loss of male fertility due to the complete conversion of stamens into petal-like organs, and CMS lines have been widely utilized in carrot breeding. Petaloid CMS is an ideal model not only for studying the mitochondrial-nuclear interaction but also for discovering genes that are essential for floral organ development. To investigate the comprehensive mechanism of CMS and homeotic organ alternation during carrot flower development, we conducted transcriptome analysis between the petaloid CMS line (P2S) and its maintainer line (P2M) at four flower developmental stages (T1-T4). A total of 2838 genes were found to be differentially expressed, among which 1495 genes were significantly downregulated and 1343 genes were significantly upregulated in the CMS line. Functional analysis showed that most of the differentially expressed genes (DEGs) were involved in protein processing in the endoplasmic reticulum, plant hormone signal transduction, and biosynthesis. A total of 16 MADS-box genes were grouped into class A, B, C, and E, but not class D, genes. Several key genes associated with oxidative phosphorylation showed continuously low expression from stage T2 in P2S, and the expression of DcPI and DcAG-like genes also greatly decreased at stage T2 in P2S. This indicated that energy deficiency might inhibit the expression of B- and C-class MADS-box genes resulting in the conversion of stamens into petals. Stamen petaloidy may act as an intrinsic stress, upregulating the expression of heat shock protein (HSP) genes and MADS-box genes at stages T3 and T4 in P2S, which results in some fertile revertants. This study will provide a better understanding of carrot petaloid CMS and floral development as a basis for further research.

Indexed as

Daucus carotaCytoplasmExtrachromosomal InheritanceFlowersGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantMADS Domain ProteinsMaternal InheritancePhenotypePlant Growth RegulatorsPlant InfertilityPlant ProteinsTranscriptomeMADS Domain ProteinsPlant Growth RegulatorsPlant Proteins

Identifiers

PMID31757985
PMCPMC6874560
OpenAlexW2991536279

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.