Evidence map›Paper›PMID 31756196›Full record

ArticlePloS one2019

Gut carriage of antimicrobial resistance genes among young children in urban Maputo, Mozambique: Associations with enteric pathogen carriage and environmental risk factors.

David Berendes, Jackie Knee, Trent Sumner, Drew Capone, Amanda Lai, Anna Wood, Siddhartha Patel, Rassul Nalá, Oliver Cumming, Joe Brown

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

David BerendesDivision of Foodborne, Waterborne, and Environmental Diseases, U.S. Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.ORCID 0000-0002-8303-9298
Jackie KneeSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Trent SumnerSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Drew CaponeSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.ORCID 0000-0002-2138-6382
Amanda LaiSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Anna WoodDepartment of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, Georgia.
Siddhartha PatelSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Rassul NaláNational Institute of Health, Maputo, Mozambique.
Oliver CummingDepartment of Disease Control, London School of Tropical Medicine and Hygiene, London, United Kingdom.
Joe BrownSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, United States of America.
Georgia Institute of Technology · USCenters for Disease Control and Prevention · USEmory University · US

Funding

Pilot Project ProgramP30ES019776 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit · 2013 to 2026
$22.6M
Microbiome, Environment, and Neurodevelopmental Delay (MEND)P50ES026071 · NIEHS · EMORY UNIVERSITY · PI MCCAULEY, LINDA A. · 2015 to 2018
$3.3M
NIEHS NIH HHS P30 ES019776NIEHS NIH HHS P50 ES026071
6 · The paper itself

Abstract

Because poor sanitation is hypothesized as a major direct and indirect pathway of exposure to antimicrobial resistance genes (ARGs), we sought to determine a) the prevalence of and b) environmental risk factors for gut carriage of key ARGs in a pediatric cohort at high risk of enteric infections due to poor water, sanitation, and hygiene (WASH) conditions. We investigated ARGs in stool from young children in crowded, low-income settlements of Maputo, Mozambique, and explored potential associations with concurrent enteric pathogen carriage, diarrhea, and environmental risk factors, including WASH. We collected stool from 120 children <14 months old and tested specimens via quantal, multiplex molecular assays for common bacterial, viral, and protozoan enteric pathogens and 84 ARGs encoding potential resistance to 7 antibiotic classes. We estimated associations between ARG detection (number and diversity detected) and concurrently-measured enteric pathogen carriage, recently-reported diarrhea, and risk factors in the child's living environment. The most commonly-detected ARGs encoded resistance to macrolides, lincosamides, and streptogramins (100% of children); tetracyclines (98%); β-lactams (94%), aminoglycosides (84%); fluoroquinolones (48%); and vancomycin (38%). Neither concurrent diarrhea nor measured environmental (including WASH) conditions were associated with ARG detection in adjusted models. Enteric pathogen carriage and ARG detection were associated: on average, 18% more ARGs were detected in stool from children carrying bacterial pathogens than those without (adjusted risk ratio (RR): 1.18, 95% confidence interval (CI): 1.02, 1.37), with 16% fewer ARGs detected in children carrying parasitic pathogens (protozoans, adjusted RR: 0.84, 95% CI: 0.71, 0.99). We observed gut ARGs conferring potential resistance to a range of antibiotics in this at-risk cohort that had high rates of enteric infection, even among children <14 months-old. Gut ARGs did not appear closely correlated with WASH, though environmental conditions were generally poor. ARG carriage may be associated with concurrent carriage of bacterial enteric pathogens, suggesting indirect linkages to WASH that merit further investigation.

Indexed as

Drug Resistance, BacterialAnti-Bacterial AgentsBacteremiaBacteriaDiarrheaFecesFemaleGastrointestinal MicrobiomeHumansInfantLincosamidesMaleMozambiquePovertyPrevalenceRisk FactorsAnti-Bacterial AgentsLincosamidesStreptogramins

Identifiers

PMID31756196
PMCPMC6874316
OpenAlexW2991320789

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.