Evidence map›Paper›PMID 31756193›Full record

ArticlePLoS computational biology2019

Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.

Nicholas G Reich, Craig J McGowan, Teresa K Yamana, Abhinav Tushar, Evan L Ray, Dave Osthus, Sasikiran Kandula, Logan C Brooks, Willow Crawford-Crudell, Graham Casey Gibson and 6 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Key questions for modelling COVID-19 exit strategies.Proceedings. Biological sciences · 2020
    Pooled it
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  8. Pre-training Epidemic Time Series Forecasters with Compartmental Prototypes.KDD : proceedings. International Conference on Knowledge Discovery & Data Mining · 2026
    Article
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  10. Review
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  13. Local Influenza Forecasts Outperform State-Level Forecasts in the United States.medRxiv : the preprint server for health sciences · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  20. Article

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Nicholas G ReichDepartment of Biostatistics and Epidemiology, University of Massachusetts-Amherst, Amherst, Massachusetts, United States of America.ORCID 0000-0003-3503-9899
Craig J McGowanInfluenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Teresa K YamanaDepartment of Environmental Health Sciences, Columbia University, New York, New York, United States of America.ORCID 0000-0001-8349-3151
Abhinav TusharSchool of Computer Science, University of Massachusetts-Amherst, Amherst, Massachusetts, United States of America.ORCID 0000-0001-7137-0728
Evan L RayDepartment of Mathematics and Statistics, Mount Holyoke College, South Hadley, Massachusetts, United States of America.ORCID 0000-0003-4035-0243
Dave OsthusStatistical Sciences Group, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.ORCID 0000-0002-4681-091X
Sasikiran KandulaDepartment of Environmental Health Sciences, Columbia University, New York, New York, United States of America.ORCID 0000-0002-6248-9097
Logan C BrooksComputer Science Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Willow Crawford-CrudellDepartment of Mathematics and Statistics, Smith College, Northampton, Massachusetts, United States of America.
Graham Casey GibsonDepartment of Biostatistics and Epidemiology, University of Massachusetts-Amherst, Amherst, Massachusetts, United States of America.
Evan MooreDepartment of Biostatistics and Epidemiology, University of Massachusetts-Amherst, Amherst, Massachusetts, United States of America.
Rebecca SilvaDepartment of Mathematics and Statistics, Amherst College, Amherst, Massachusetts, United States of America.
Matthew BiggerstaffInfluenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.ORCID 0000-0001-5108-8311
Michael A JohanssonDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, San Juan, Puerto Rico, United States of America.
Roni RosenfeldMachine Learning Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0002-3274-5862
Jeffrey ShamanDepartment of Environmental Health Sciences, Columbia University, New York, New York, United States of America.ORCID 0000-0002-7216-7809

Funding

Training, Outreach & Diversity ComponentU54GM088491 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ROBERTS, MARK STENIUS · 2009 to 2018
$16.7M
Statistical methods for real-time forecasts of infectious disease: expanding dynamic time-series and machine learning approaches for pandemic scenariosR35GM119582 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Nicholas G Reich · 2016 to 2026
$4.8M
Development and Dissemination of Operational Real-Time Respiratory Virus ForecastU01GM110748 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHAMAN, JEFFREY L · 2014 to 2018
$2.6M
Influenza Outbreak Prediction: Applying Data Assimilation Methodology to Make...R01GM100467 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHAMAN, JEFFREY L · 2011 to 2015
$1.4M
CLC NIH HHS C0000008NIGMS NIH HHS R01 GM100467NIGMS NIH HHS R35 GM119582NIGMS NIH HHS U01 GM110748NIGMS NIH HHS U54 GM088491
6 · The paper itself

Abstract

Seasonal influenza results in substantial annual morbidity and mortality in the United States and worldwide. Accurate forecasts of key features of influenza epidemics, such as the timing and severity of the peak incidence in a given season, can inform public health response to outbreaks. As part of ongoing efforts to incorporate data and advanced analytical methods into public health decision-making, the United States Centers for Disease Control and Prevention (CDC) has organized seasonal influenza forecasting challenges since the 2013/2014 season. In the 2017/2018 season, 22 teams participated. A subset of four teams created a research consortium called the FluSight Network in early 2017. During the 2017/2018 season they worked together to produce a collaborative multi-model ensemble that combined 21 separate component models into a single model using a machine learning technique called stacking. This approach creates a weighted average of predictive densities where the weight for each component is determined by maximizing overall ensemble accuracy over past seasons. In the 2017/2018 influenza season, one of the largest seasonal outbreaks in the last 15 years, this multi-model ensemble performed better on average than all individual component models and placed second overall in the CDC challenge. It also outperformed the baseline multi-model ensemble created by the CDC that took a simple average of all models submitted to the forecasting challenge. This project shows that collaborative efforts between research teams to develop ensemble forecasting approaches can bring measurable improvements in forecast accuracy and important reductions in the variability of performance from year to year. Efforts such as this, that emphasize real-time testing and evaluation of forecasting models and facilitate the close collaboration between public health officials and modeling researchers, are essential to improving our understanding of how best to use forecasts to improve public health response to seasonal and emerging epidemic threats.

Indexed as

Centers for Disease Control and Prevention, U.S.Computer SimulationData AccuracyData CollectionDisease OutbreaksEpidemicsForecastingHumansIncidenceInfluenza, HumanMachine LearningModels, BiologicalModels, StatisticalModels, TheoreticalPublic HealthSeasons

Identifiers

PMID31756193
PMCPMC6897420

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.