Evidence map›Paper›PMID 31754859›Full record

ArticleJournal of industrial microbiology & biotechnology2020

A novel method based on nonparametric regression with a Gaussian kernel algorithm identifies the critical components in CHO media and feed optimization.

Mao Zou, Zi-Wei Zhou, Li Fan, Wei-Jian Zhang, Liang Zhao, Xu-Ping Liu, Hai-Bin Wang, Wen-Song Tan

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. A review of algorithmic approaches for cell culture media optimization.Frontiers in bioengineering and biotechnology · 2023
    Review
  4. Review
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mao ZouState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China.ORCID http://orcid.org/0000-0002-9081-7385
Zi-Wei ZhouShanghai Bioengine Sci-Tech Co. Ltd, 201203, Shanghai, China.
Li FanState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China.
Wei-Jian ZhangState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China.
Liang ZhaoState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China.
Xu-Ping LiuState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China.
Hai-Bin WangHisun Pharmaceutical (Hangzhou) Co. Ltd, Xialiancun, Xukou, Fuyang, 311404, Hangzhou, Zhejiang, China.
Wen-Song TanState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237, Shanghai, China. wstan@ecust.edu.cn.

Funding

Fundamental Research Funds for the Central Universities 22221818014
6 · The paper itself

Abstract

As the composition of animal cell culture medium becomes more complex, the identification of key variables is important for simplifying and guiding the subsequent medium optimization. However, the traditional experimental design methods are impractical and limited in their ability to explore such large feature spaces. Therefore, in this work, we developed a NRGK (nonparametric regression with Gaussian kernel) method, which aimed to identify the critical components that affect product titres during the development of cell culture media. With this nonparametric model, we successfully identified the important components that were neglected by the conventional PLS (partial least squares regression) method. The superiority of the NRGK method was further verified by ANOVA (analysis of variance). Additionally, it was proven that the selection accuracy was increased with the NRGK method because of its ability to model both the nonlinear and linear relationships between the medium components and titres. The application of this NRGK method provides new perspectives for the more precise identification of the critical components that further enable the optimization of media in a shorter timeframe.

Indexed as

AlgorithmsAnimalsCHO CellsCricetulusCulture MediaLeast-Squares AnalysisResearch DesignCulture MediaChinese hamster ovary cellsMedium optimizationNonparametric regression with Gaussian kernelVariable selection

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.