Evidence map›Paper›PMID 31754202›Full record

ArticleScientific reports2019

The rs1256328 (ALPL) and rs12654812 (RGS14) Polymorphisms are Associated with Susceptibility to Calcium Nephrolithiasis in a Taiwanese population.

Wei-Chiao Chen, Wan-Hsuan Chou, Hou-Wei Chu, Chi-Chen Huang, Xiao Liu, Wei-Pin Chang, Yii-Her Chou, Wei-Chiao Chang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 4 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 4 syntheses or guidelines pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Article
  7. Observational
  8. Article
  9. The Intricacies of Renal Phosphate Reabsorption-An Overview.International journal of molecular sciences · 2024
    Review
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  13. Genetic Variants Associated With Mineral Metabolism Traits in Chronic Kidney Disease.The Journal of clinical endocrinology and metabolism · 2022
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. RGS14 Regulation of Post-Synaptic Signaling and Spine Plasticity in Brain.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Wei-Chiao ChenInstitute of Clinical Pharmacy and Pharmaceutical Sciences, College of Medicine, National Cheng Kung University, Tainan, Taiwan.
Wan-Hsuan ChouDepartment of Clinical Pharmacy, School of Pharmacy, Taipei Medical University, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-7693-5959
Hou-Wei ChuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chi-Chen HuangGraduate Institute of Neural Regenerative Medicine, College of Medical Science and Technology/Center for Neurotrauma and Neuroregeneration, Taipei Medical University, Taipei, Taiwan.ORCID http://orcid.org/0000-0001-5410-8285
Xiao LiuDepartment of Human Genetics, The University of Chicago, Chicago, USA.
Wei-Pin ChangSchool of Health Care Administration, College of Management, Taipei Medical University, Taipei, Taiwan. wpchang@tmu.edu.tw.
Yii-Her ChouDepartment of Urology, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan. yihech@gap.kmu.edu.tw.
Wei-Chiao ChangDepartment of Clinical Pharmacy, School of Pharmacy, Taipei Medical University, Taipei, Taiwan. wcc@tmu.edu.tw.
Kaohsiung Medical University · TWTaipei Medical University · TWTaipei Medical University Hospital · TWInstitute of Biomedical Sciences, Academia Sinica · TWUniversity of Chicago · US

Funding

Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) MOST105-2628-B-038-001-MY4
6 · The paper itself

Abstract

Nephrolithiasis is a common disease affecting almost all populations, with an increasing prevalence over the past decades. Previous studies revealed several functional polymorphisms associated with the pathogenesis of nephrolithiasis. However, data on Asian populations are limited. In this study, three candidate polymorphisms were selected from previous studies to investigate the correlations with nephrolithiasis in a Taiwanese population. In total, 454 nephrolithiasis patients were recruited from Kaohsiung Medical University Hospital, with SNP frequency for 1513 subjects of general population from the Taiwan Biobank (TWB) as a genotypic reference. Results revealed that subjects with minor TT genotype at rs1256328 (alkaline phosphatase, liver/bone/kidney (ALPL)) have higher susceptibility to nephrolithiasis (odds ratio (OR) = 2.03, p = 0.0013). In addition, subjects carrying the minor AA genotype at rs12654812 (regulator of G protein signaling 14 (RGS14)) have higher susceptibility to nephrolithiasis (OR = 1.91, p = 0.0017). Among nephrolithiasis patients, subjects with GG at rs7627468 (calcium-sensing receptor (CASR)) have lower pH level in urine (p = 0.0088). Importantly, rs7627468 is associated with the expressions of IQCB1 and EAF2. rs12654812 could influence the expression of RGS14 itself, MXD3, and FGFR4. In summary, this study successfully validated the genetic roles of rs1256328 and rs12654812 in human nephrolithiasis.

Indexed as

Genetic Predisposition to DiseaseAdultAgedAged, 80 and overAlkaline PhosphataseCalciumCase-Control StudiesFemaleHumansHydrogen-Ion ConcentrationKidney CalculiMaleMiddle AgedPolymorphism, Single NucleotidePrevalenceReceptors, Calcium-SensingAlkaline PhosphataseALPL protein, humanCalciumCASR protein, humanReceptors, Calcium-SensingRGS14 protein, humanRGS Proteins

Identifiers

PMID31754202
PMCPMC6872875
OpenAlexW2990351390

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.