Evidence map›Paper›PMID 31754145›Full record

ArticleScientific reports2019

Dissection of major cancer gene variants in subsets of circulating tumor cells in advanced breast cancer.

Stella D'Oronzo, Domenica Lovero, Raffaele Palmirotta, Luigia Stefania Stucci, Marco Tucci, Claudia Felici, Eliano Cascardi, Carmela Giardina, Paola Cafforio, Franco Silvestris

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Stella D'OronzoDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Domenica LoveroDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Raffaele PalmirottaDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Luigia Stefania StucciDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Marco TucciDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Claudia FeliciDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Eliano CascardiDepartment of Emergency and Organs Transplant, Division of Pathology, University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Carmela GiardinaDepartment of Emergency and Organs Transplant, Division of Pathology, University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.
Paola CafforioDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy.ORCID http://orcid.org/0000-0002-6940-8472
Franco SilvestrisDepartment of Biomedical Sciences and Human Oncology - Section of Internal Medicine and Clinical Oncology - University of Bari Aldo Moro, P.zza G. Cesare, 11 - 70124, Bari, Italy. francesco.silvestris@uniba.it.
University of Bari Aldo Moro · ITIstituto Tumori Bari · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enumeration of circulating tumor cells (CTCs) may reflect the metastatic potential of breast cancer (BC). By using the DEPArray, we investigated CTCs with respect to their epithelial-to-mesenchymal transition phenotype and compared their genomic heterogeneity with tissue biopsies. Seventeen stage IV BC patients were enrolled. Pre-enriched CTC suspensions were stained with fluorescent-labeled antibodies to epithelial (E) and mesenchymal (M) markers. CTC samples were processed by DEPArray system and clustered in relation to their markers. DNA from CTCs, as well as from primary tumor samples, was sequenced by next generation sequencing to assess the mutational state of 50 major cancer-related genes. We identified four different CTC subsets that harbored different gene variants. The most heterogenous CTC subsets included the M+/E- phenotype, which, however, expressed only 7 repeatedly mutated genes, while in the M-/E+ subset multiple mutations affected only 2 out of 50 genes. When matching all gene variants among CTC subsets, a small number of mutations was shared by only 4 genes, namely ATM, FGFR3, PIK3CA, and TP53 that, however, were absent in primary tumors. Our results postulate that the detected mutations in all CTC subsets may be considered as genomic markers of metastatic dissemination to be investigated during early stages of BC.

Indexed as

AdultAtaxia Telangiectasia Mutated ProteinsBase SequenceBiomarkers, TumorBreastBreast NeoplasmsClass I Phosphatidylinositol 3-KinasesDNA Mutational AnalysisEpithelial-Mesenchymal TransitionFemaleGenetic VariationHigh-Throughput Nucleotide SequencingHumansMiddle AgedMutationNeoplastic Cells, CirculatingAtaxia Telangiectasia Mutated ProteinsATM protein, humanBiomarkers, TumorClass I Phosphatidylinositol 3-KinasesFGFR3 protein, humanPIK3CA protein, humanReceptor, Fibroblast Growth Factor, Type 3TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID31754145
PMCPMC6872745
OpenAlexW2990096229

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.