Evidence map›Paper›PMID 31754017›Full record

ArticleGenetics2020

The Driver of Extreme Human-Specific Olduvai Repeat Expansion Remains Highly Active in the Human Genome.

Ilea E Heft, Yulia Mostovoy, Michal Levy-Sakin, Walfred Ma, Aaron J Stevens, Steven Pastor, Jennifer McCaffrey, Dario Boffelli, David I Martin, Ming Xiao and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Proteolytic activation of human-specific Olduvai domains by the furin protease.International journal of biological macromolecules · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Ilea E Heft *Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado 80045.
Yulia Mostovoy *Cardiovascular Research Institute, University of California, San Francisco, California.
Michal Levy-SakinCardiovascular Research Institute, University of California, San Francisco, California james.sikela@cuanschutz.edu.
Walfred MaCardiovascular Research Institute, University of California, San Francisco, California james.sikela@cuanschutz.edu.ORCID 0000-0001-8650-5541
Aaron J StevensDepartment of Pathology, University of Otago, Christchurch, New Zealand 8140.
Steven PastorSchool of Biomedical Engineering, Drexel University, Philadelphia, Pennsylvania 19104.
Jennifer McCaffreySchool of Biomedical Engineering, Drexel University, Philadelphia, Pennsylvania 19104.
Dario BoffelliChildren's Hospital Oakland Research Institute, Oakland, California 94609.
David I MartinChildren's Hospital Oakland Research Institute, Oakland, California 94609.
Ming XiaoSchool of Biomedical Engineering, Drexel University, Philadelphia, Pennsylvania 19104.
Martin A KennedyDepartment of Pathology, University of Otago, Christchurch, New Zealand 8140.
Pui-Yan KwokCardiovascular Research Institute, University of California, San Francisco, California.
James M SikelaDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado 80045 james.sikela@cuanschutz.edu.ORCID 0000-0001-5820-2762
Drexel University · USUniversity of California, San Francisco · USUniversity of Colorado Denver · USUniversity of Otago · NZ

Funding

MOLECULAR AND CELLULAR BASIS OF CARDIOVASCULAR DISEASET32HL007731 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Brian L Black · 1992 to 2026
$12.4M
Single molecule DNA mapping for genome and CNV analysisR01HG005946 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN, XIAO, MING · 2010 to 2021
$6.5M
Investigation of DUF1220 domains in human brain function and diseaseR01MH108684 · NIMH · UNIVERSITY OF COLORADO DENVER · PI SIKELA, JAMES M · 2016 to 2020
$1.9M
NHGRI NIH HHS R01 HG005946NHLBI NIH HHS T32 HL007731NIMH NIH HHS R01 MH108684
6 · The paper itself

Abstract

Sequences encoding Olduvai protein domains (formerly DUF1220) show the greatest human lineage-specific increase in copy number of any coding region in the genome and have been associated, in a dosage-dependent manner, with brain size, cognitive aptitude, autism, and schizophrenia. Tandem intragenic duplications of a three-domain block, termed the Olduvai triplet, in four

Indexed as

Genome, HumanTrinucleotide Repeat ExpansionAnimalsBase SequenceCarrier ProteinsDNA Copy Number VariationsEvolution, MolecularGene AmplificationGene DosageGenomic InstabilityG-QuadruplexesHomologous RecombinationHumansPrimatesProtein DomainsSequence HomologyCarrier ProteinsNBPF1 protein, humanbrainevolutiongene duplicationgenomehyperamplification

Identifiers

PMID31754017
PMCPMC6944415
OpenAlexW2990346645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.