Evidence map›Paper›PMID 31751447›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2020

A Common NLRC4 Gene Variant Associates With Inflammation and Pulmonary Function in Human Immunodeficiency Virus and Tuberculosis.

Shruthi Ravimohan, Pholo Maenetje, Sara C Auld, Itai Ncube, Mandla Mlotshwa, William Chase, Caroline T Tiemessen, Mboyo-Di-Tamba Vangu, Robert S Wallis, Gavin Churchyard and 3 more

Open access · greenAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Observational
  3. Article
  4. Article
  5. Targeting inflammasomes as a therapeutic potential for HIV/AIDS.Cellular and molecular life sciences : CMLS · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Inflammasomes as mediators of inflammation in HIV-1 infection.Translational research : the journal of laboratory and clinical medicine · 2023
    Review
  10. Article
  11. Pyroptosis and Inflammasome-Related Genes-Pharmacogenomics and personalized medicine · 2023
    Article
  12. Article
  13. Article
  14. Gain-of-Function Polymorphisms in Human Inflammasomes: Implications for Cystic Fibrosis.American journal of respiratory cell and molecular biology · 2021
    Article
  15. Article
  16. Computational and mathematical methods in medicine · 2021
    Article
  17. Polymorphisms of theDiabetes, metabolic syndrome and obesity : targets and therapy · 2020
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Shruthi RavimohanDepartment of Medicine, Division of Infectious Diseases, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Pholo MaenetjeThe Aurum Institute, Johannesburg, South Africa.
Sara C AuldDepartment of Medicine, Emory University Rollins School of Public Health and School of Medicine, Atlanta, Georgia, USA, Johannesburg, South Africa.
Itai NcubeThe Aurum Institute, Johannesburg, South Africa.
Mandla MlotshwaThe Aurum Institute, Johannesburg, South Africa.
William ChaseDepartment of Medicine, Division of Infectious Diseases, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Caroline T TiemessenCentre for HIV-1 and STIs, National Institute for Communicable Diseases, and Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Mboyo-Di-Tamba VanguNuclear Medicine, CM Johannesburg Academic Hospital, University of the Witwatersrand, Johannesburg, South Africa.
Robert S WallisThe Aurum Institute, Johannesburg, South Africa.
Gavin ChurchyardThe Aurum Institute, Johannesburg, South Africa.
Drew WeissmanDepartment of Medicine, Division of Infectious Diseases, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Hardy KornfeldDepartment of Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Gregory P BissonDepartment of Medicine, Division of Infectious Diseases, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Aurum Institute · ZAUniversity of Pennsylvania · USUniversity of the Witwatersrand · ZAEmory University · USUniversity of Massachusetts Chan Medical School · US

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID S METZGER · 1999 to 2026
$78.6M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Institutional Clinical and Translational Science AwardKL2TR001879 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$13.7M
Rapid Immune Restoration and Lung Injury in HIV/TBR01AI120821 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BISSON, GREGORY P. · 2015 to 2019
$3.3M
Impact of HIV infection on early responses to TB exposureK23AI134182 · NIAID · EMORY UNIVERSITY · PI AULD, SARA · 2018 to 2023
$972k
NCATS NIH HHS KL2 TR001879NIAID NIH HHS K23 AI134182NIAID NIH HHS P30 AI045008NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI120821
6 · The paper itself

Abstract

backgroundInflammasomes mediate inflammation in adults living with both human immunodeficiency virus (HIV) and tuberculosis (TB), but the relevance of inflammasome gene polymorphisms in TB-associated pulmonary damage is unknown. We hypothesized that functional single-nucleotide polymorphisms (SNPs) in inflammasome pathway genes modify systemic and pulmonary inflammation, contributing to respiratory impairment in adults living with HIV/pulmonary TB.

methodsThis was a prospective cohort study set in South Africa following individuals living with HIV/TB up to 48 weeks post-antiretroviral therapy (ART) initiation. Ten functional SNPs in 5 inflammasome pathway genes were related to circulating inflammatory biomarkers and lung function assessed by spirometry pre- and post-ART initiation. Analyses used 2-sided t tests, Wilcoxon rank sum tests, Spearman correlation coefficients, linear regression, and generalized estimating equation models.

resultsAmong 102 patients with baseline samples, the minor allele (T) in NLRC4 rs385076 was independently associated with lower levels of interleukin (IL)-18 and IL-6 before and up to 12 weeks post-ART initiation (Benjamini-Hochberg corrected P values < .02). Patients with the CT/TT genotypes also had improved lung function vs CC patients up to 48 weeks post-ART initiation (forced vital capacity, 206 mL higher; 95% confidence interval [CI], 67-345 mL; P = .004 and forced expiratory volume in 1 second, 143 mL higher; 95% CI, 11-274 mL; P = .034).

conclusionsA common SNP in the NLRC4 inflammasome may modify TB-associated inflammation in clinically relevant ways. This SNP may identify high-risk groups for lung damage in TB. Inhibition of NLRC4 activity may be an important approach for TB host-directed therapy.

Indexed as

HIV InfectionsTuberculosisAdultCalcium-Binding ProteinsCARD Signaling Adaptor ProteinsHIVHumansInflammationLungProspective StudiesSouth AfricaCalcium-Binding ProteinsCARD Signaling Adaptor ProteinsNLRC4 protein, humanHIVinflammasomeslung functionsingle nucleotide polymorphismtuberculosis

Identifiers

PMID31751447
PMCPMC7428399
OpenAlexW2989919081

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.