Evidence map›Paper›PMID 31751331›Full record

ArticlePLoS biology2019

Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity.

Hugo G Hilton, Nimrod D Rubinstein, Peter Janki, Andrea T Ireland, Nicholas Bernstein, Nicole L Fong, Kevin M Wright, Megan Smith, David Finkle, Baby Martin-McNulty and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Hugo G HiltonCalico Life Sciences LLC, South San Francisco, California, United States of America.ORCID 0000-0003-1488-7194
Nimrod D RubinsteinCalico Life Sciences LLC, South San Francisco, California, United States of America.ORCID 0000-0002-0779-2843
Peter JankiCalico Life Sciences LLC, South San Francisco, California, United States of America.
Andrea T IrelandCalico Life Sciences LLC, South San Francisco, California, United States of America.
Nicholas BernsteinCalico Life Sciences LLC, South San Francisco, California, United States of America.ORCID 0000-0001-9685-0998
Nicole L FongCalico Life Sciences LLC, South San Francisco, California, United States of America.
Kevin M WrightCalico Life Sciences LLC, South San Francisco, California, United States of America.
Megan SmithCalico Life Sciences LLC, South San Francisco, California, United States of America.
David FinkleCalico Life Sciences LLC, South San Francisco, California, United States of America.
Baby Martin-McNultyCalico Life Sciences LLC, South San Francisco, California, United States of America.
Margaret RoyCalico Life Sciences LLC, South San Francisco, California, United States of America.
Denise M ImaiComparative Pathology Laboratory, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Vladimir JojicCalico Life Sciences LLC, South San Francisco, California, United States of America.
Rochelle BuffensteinCalico Life Sciences LLC, South San Francisco, California, United States of America.ORCID 0000-0003-3285-8311
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The immune system comprises a complex network of specialized cells that protects against infection, eliminates cancerous cells, and regulates tissue repair, thus serving a critical role in homeostasis, health span, and life span. The subterranean-dwelling naked mole-rat (NM-R; Heterocephalus glaber) exhibits prolonged life span relative to its body size, is unusually cancer resistant, and manifests few physiological or molecular changes with advancing age. We therefore hypothesized that the immune system of NM-Rs evolved unique features that confer enhanced cancer immunosurveillance and prevent the age-associated decline in homeostasis. Using single-cell RNA-sequencing (scRNA-seq) we mapped the immune system of the NM-R and compared it to that of the short-lived, cancer-prone mouse. In contrast to the mouse, we find that the NM-R immune system is characterized by a high myeloid-to-lymphoid cell ratio that includes a novel, lipopolysaccharide (LPS)-responsive, granulocyte cell subset. Surprisingly, we also find that NM-Rs lack canonical natural killer (NK) cells. Our comparative genomics analyses support this finding, showing that the NM-R genome lacks an expanded gene family that controls NK cell function in several other species. Furthermore, we reconstructed the evolutionary history that likely led to this genomic state. The NM-R thus challenges our current understanding of mammalian immunity, favoring an atypical, myeloid-biased mode of innate immunosurveillance, which may contribute to its remarkable health span.

Indexed as

AnimalsBiological EvolutionComputational BiologyGenomeGenomicsLongevityMammalsMiceMole RatsSequence Analysis, RNASingle-Cell AnalysisTranscriptome

Identifiers

PMID31751331
PMCPMC6894886
OpenAlexW2990981753

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.