Evidence map›Paper›PMID 31750876›Full record

ArticleThe Biochemical journal2019

Non-conservation of folding rates in the thioredoxin family reveals degradation of ancestral unassisted-folding.

Gloria Gamiz-Arco, Valeria A Risso, Adela M Candel, Alvaro Inglés-Prieto, Maria L Romero-Romero, Eric A Gaucher, Jose A Gavira, Beatriz Ibarra-Molero, Jose M Sanchez-Ruiz

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Frontiers in genetics · 2025
    Article
  4. Article
  5. Article
  6. Evolution, folding, and design of TIM barrels and related proteins.Current opinion in structural biology · 2021
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Gloria Gamiz-ArcoDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Valeria A RissoDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Adela M CandelDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Alvaro Inglés-PrietoDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Maria L Romero-RomeroDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Eric A GaucherDepartment of Biology, Georgia State University, Atlanta, GA 30303, U.S.A.
Jose A GaviraLaboratorio de Estudios Cristalográficos, Instituto Andaluz de Ciencias de la Tierra, CSIC-University of Granada, Avenida de las Palmeras 4, 18100 Armilla, Granada, Spain.
Beatriz Ibarra-MoleroDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Jose M Sanchez-RuizDepartamento de Quimica Fisica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain.
Universidad de Granada · ESGeorgia State University · US

Funding

Evolution of urate metabolismR01AR069137 · NIAMS · GEORGIA STATE UNIVERSITY · PI GAUCHER, ERIC · 2016 to 2021
$1.5M
NIAMS NIH HHS R01 AR069137NIH HHS 1R01AR069137
6 · The paper itself

Abstract

Evolution involves not only adaptation, but also the degradation of superfluous features. Many examples of degradation at the morphological level are known (vestigial organs, for instance). However, the impact of degradation on molecular evolution has been rarely addressed. Thioredoxins serve as general oxidoreductases in all cells. Here, we report extensive mutational analyses on the folding of modern and resurrected ancestral bacterial thioredoxins. Contrary to claims from recent literature, in vitro folding rates in the thioredoxin family are not evolutionarily conserved, but span at least a ∼100-fold range. Furthermore, modern thioredoxin folding is often substantially slower than ancestral thioredoxin folding. Unassisted folding, as probed in vitro, thus emerges as an ancestral vestigial feature that underwent degradation, plausibly upon the evolutionary emergence of efficient cellular folding assistance. More generally, our results provide evidence that degradation of ancestral features shapes, not only morphological evolution, but also the evolution of individual proteins.

Indexed as

Evolution, MolecularProtein UnfoldingProteolysisAmino Acid SequenceCatalytic DomainEscherichia coliEscherichia coli ProteinsKineticsMutationPhylogenyProtein EngineeringThioredoxinsEscherichia coli ProteinsThioredoxinsmolecular evolutionprotein engineeringprotein folding

Identifiers

PMID31750876
PMCPMC6906118
OpenAlexW2989881839

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.