Evidence map›Paper›PMID 31748650›Full record

ArticleScientific reports2019

Genome-wide CRISPR Screen to Identify Genes that Suppress Transformation in the Presence of Endogenous Kras

Jianguo Huang, Mark Chen, Eric S Xu, Lixia Luo, Yan Ma, Wesley Huang, Warren Floyd, Tyler S Klann, So Young Kim, Charles A Gersbach and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Evaluation of twoMolecular therapy. Methods & clinical development · 2021
    Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jianguo HuangDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA.
Mark ChenDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina, 27708, USA.ORCID http://orcid.org/0000-0001-5616-9321
Eric S XuDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA.ORCID http://orcid.org/0000-0001-9933-9386
Lixia LuoDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA.
Yan MaDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA.
Wesley HuangDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA.
Warren FloydDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina, 27708, USA.
Tyler S KlannDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708, USA.
So Young KimDepartment of Molecular Genetics and Microbiology, Duke University, Durham, North Carolina, 27708, USA.
Charles A GersbachDepartment of Biomedical Engineering, Duke University, Durham, North Carolina, 27708, USA.ORCID http://orcid.org/0000-0003-1478-4013
Diana M CardonaDepartment of Pathology, Duke University, Durham, North Carolina, 27708, USA.
David G KirschDepartment of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, 27708, USA. david.kirsch@duke.edu.ORCID http://orcid.org/0000-0002-2086-205X
Duke Medical Center · USDuke University · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Advancing Cancer Therapy through Ground Breaking Research in Radiation BiologyR35CA197616 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI David Guy Kirsch · 2016 to 2026
$10.7M
Using CRISPR/Cas9 to dissect the role of FUS-CHOP in tumor response to radiation therapyF30CA206424 · NCI · DUKE UNIVERSITY · PI CHEN, MARK SHUO · 2016 to 2019
$155k
NCI NIH HHS P30 CA014236NIGMS NIH HHS T32 GM007171U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) F30CA206424U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R35CA197616U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) T32GM007171
6 · The paper itself

Abstract

Cooperating gene mutations are typically required to transform normal cells enabling growth in soft agar or in immunodeficient mice. For example, mutations in Kras and transformation-related protein 53 (Trp53) are known to transform a variety of mesenchymal and epithelial cells in vitro and in vivo. Identifying other genes that can cooperate with oncogenic Kras and substitute for Trp53 mutation has the potential to lead to new insights into mechanisms of carcinogenesis. Here, we applied a genome-wide CRISPR/Cas9 knockout screen in Kras

Indexed as

Cell ProliferationMutationAnimalsCells, CulturedCell Transformation, NeoplasticCRISPR-Cas SystemsEmbryo, MammalianFibroblastsGene Expression Regulation, NeoplasticMiceMice, Inbred C57BLMice, NudeNeoplasm ProteinsProto-Oncogene Proteins p21(ras)Sarcoma, ExperimentalSignal TransductionNeoplasm ProteinsProto-Oncogene Proteins p21(ras)

Identifiers

PMID31748650
PMCPMC6868134
OpenAlexW2991169286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.