Evidence map›Paper›PMID 31748579›Full record

ArticleScientific reports2019

Identification of cell context-dependent YAP-associated proteins reveals β

Joanna Y Lee, Antonia A Dominguez, Sungmin Nam, Ryan S Stowers, Lei S Qi, Ovijit Chaudhuri

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Matrix degradation enhances stress relaxation, regulating cell adhesion and spreading.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Degradability tunes ECM stress relaxation and cellular mechanics.bioRxiv : the preprint server for biology · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Joanna Y LeeDepartment of Mechanical Engineering, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-7870-8445
Antonia A DominguezDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA.
Sungmin NamDepartment of Mechanical Engineering, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0003-1016-3738
Ryan S StowersDepartment of Mechanical Engineering, Stanford University, Stanford, CA, 94305, USA.
Lei S QiDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-3965-3223
Ovijit ChaudhuriDepartment of Mechanical Engineering, Stanford University, Stanford, CA, 94305, USA. chaudhuri@stanford.edu.ORCID http://orcid.org/0000-0002-9287-3401
Stanford University · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
Role of extracellular matrix malleability in mediating breast cancer cell invasion and migrationR37CA214136 · NCI · STANFORD UNIVERSITY · PI CHAUDHURI, OVIJIT · 2018 to 2024
$2.5M
LTQ Orbitrap XL ETD Mass SpectrometerS10RR027425 · NCRR · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2010 to 2010
$500k
NCI NIH HHS P30 CA124435NCI NIH HHS R37 CA214136NCRR NIH HHS S10 RR027425
6 · The paper itself

Abstract

Yes-associated protein (YAP) is a transcriptional regulator and mechanotransducer, relaying extracellular matrix (ECM) stiffness into proliferative gene expression in 2D culture. Previous studies show that YAP activation is dependent on F-actin stress fiber mediated nuclear pore opening, however the protein mediators of YAP translocation remain unclear. Here, we show that YAP co-localizes with F-actin during activating conditions, such as sparse plating and culturing on stiff 2D substrates. To identify proteins mediating YAP translocation, we performed co-immunoprecipitation followed by mass spectrometry (co-IP/MS) for proteins that differentially associated with YAP under activating conditions. Interestingly, YAP preferentially associates with β

Indexed as

Mechanotransduction, CellularActin CytoskeletonActinsCell Cycle ProteinsCells, CulturedCRISPR-Cas SystemsExtracellular MatrixHumansIntegrin beta1Integrin beta4PhosphorylationProtein Processing, Post-TranslationalProtein TransportSignal TransductionTranscription FactorsActinsCell Cycle ProteinsIntegrin beta1Integrin beta4Itgb1 protein, humanITGB4 protein, humanTranscription FactorsYY1AP1 protein, human

Identifiers

PMID31748579
PMCPMC6868278
OpenAlexW2990407487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.