Evidence map›Paper›PMID 31748536›Full record

ArticleNature communications2019

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact.

Lisanne F van Dessel, Job van Riet, Minke Smits, Yanyun Zhu, Paul Hamberg, Michiel S van der Heijden, Andries M Bergman, Inge M van Oort, Ronald de Wit, Emile E Voest and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed, 1 pooled it
19.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 1 synthesis or guideline pooled it, 207 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  4. Phase II Multicenter Study of Enzalutamide in Metastatic Castration-Resistant Prostate Cancer to Identify Mechanisms Driving Resistance.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Trial
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63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 3 countries.

Lisanne F van DesselDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Job van RietDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Minke SmitsDepartment of Medical Oncology, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Yanyun ZhuDivision on Oncogenomics, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Paul HambergDepartment of Internal Medicine, Franciscus Gasthuis & Vlietland, Rotterdam, The Netherlands.
Michiel S van der HeijdenCenter for Personalized Cancer Treatment, Rotterdam, The Netherlands.
Andries M BergmanDivision on Oncogenomics, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Inge M van OortDepartment of Urology, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.
Ronald de WitDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Emile E VoestOncode Institute, Utrecht, The Netherlands.
Neeltje SteeghsCenter for Personalized Cancer Treatment, Rotterdam, The Netherlands.
Takafumi N YamaguchiInformatics and Biocomputing Program, Ontario Institute for Cancer Research, Toronto, Canada.
Julie LivingstoneInformatics and Biocomputing Program, Ontario Institute for Cancer Research, Toronto, Canada.ORCID http://orcid.org/0000-0002-8424-3768
Paul C BoutrosInformatics and Biocomputing Program, Ontario Institute for Cancer Research, Toronto, Canada.ORCID http://orcid.org/0000-0003-0553-7520
John W M MartensDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-3428-3366
Stefan SleijferDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.
Edwin CuppenCenter for Molecular Medicine and Oncode Institute, University Medical Center Utrecht, Utrecht, The Netherlands.
Wilbert ZwartDivision on Oncogenomics, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Harmen J G van de WerkenCancer Computational Biology Center, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-9794-1477
Niven MehraDepartment of Medical Oncology, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-4794-1831
Martijn P LolkemaDepartment of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Center Rotterdam, Rotterdam, The Netherlands. m.lolkema@erasmusmc.nl.ORCID http://orcid.org/0000-0003-0466-2928
Erasmus MC · NLThe Netherlands Cancer Institute · NLOntario Institute for Cancer Research · CARadboud University Nijmegen · NLCenter for Personalized Cancer Treatment · NLSint Franciscus Gasthuis · NLUniversity Medical Center Utrecht · NL

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
NCI NIH HHS P30 CA016042
6 · The paper itself

Abstract

Metastatic castration-resistant prostate cancer (mCRPC) has a highly complex genomic landscape. With the recent development of novel treatments, accurate stratification strategies are needed. Here we present the whole-genome sequencing (WGS) analysis of fresh-frozen metastatic biopsies from 197 mCRPC patients. Using unsupervised clustering based on genomic features, we define eight distinct genomic clusters. We observe potentially clinically relevant genotypes, including microsatellite instability (MSI), homologous recombination deficiency (HRD) enriched with genomic deletions and BRCA2 aberrations, a tandem duplication genotype associated with CDK12

Indexed as

Bone NeoplasmsBRCA2 ProteinChromatin Immunoprecipitation SequencingCyclin-Dependent KinasesDNA Copy Number VariationsEnhancer Elements, GeneticGenotypeHumansLiver NeoplasmsLymph NodesMaleMicrosatellite InstabilityNeoplasm MetastasisOncogene Proteins, FusionProstatic NeoplasmsProstatic Neoplasms, Castration-ResistantAR protein, humanBRCA2 ProteinBRCA2 protein, humanCDK12 protein, humanCyclin-Dependent KinasesOncogene Proteins, FusionReceptors, AndrogenTMPRSS2-ERG fusion protein, human

Identifiers

PMID31748536
PMCPMC6868175
OpenAlexW2990053395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.