Evidence map›Paper›PMID 31748409›Full record

ArticleThe Journal of biological chemistry2019

Fidelity of prespacer capture and processing is governed by the PAM-mediated interactions of Cas1-2 adaptation complex in CRISPR-Cas type I-E system.

Kakimani Nagarajan Yoganand, Manasasri Muralidharan, Siddharth Nimkar, Baskaran Anand

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kakimani Nagarajan YoganandDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, India.
Manasasri MuralidharanDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, India.
Siddharth NimkarDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, India.
Baskaran AnandDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, India banand@iitg.ac.in.ORCID 0000-0002-7125-4011
Indian Institute of Technology Guwahati · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prokaryotes deploy CRISPR-Cas-based RNA-guided adaptive immunity to fend off mobile genetic elements such as phages and plasmids. During CRISPR adaptation, which is the first stage of CRISPR immunity, the Cas1-2 integrase complex captures invader-derived prespacer DNA and specifically integrates it at the leader-repeat junction as spacers. For this integration, several variants of CRISPR-Cas systems use Cas4 as an indispensable nuclease for selectively processing the protospacer adjacent motif (PAM) containing prespacers to a defined length. Surprisingly, however, a few CRISPR-Cas systems, such as type I-E, are bereft of Cas4. Despite the absence of Cas4, how the prespacers show impeccable conservation for length and PAM selection in type I-E remains intriguing. Here, using

Indexed as

Binding SitesCRISPR-Associated ProteinsCRISPR-Cas SystemsDNAElectrophoretic Mobility Shift AssayEndodeoxyribonucleasesEndonucleasesEscherichia coliEscherichia coli ProteinsExonucleasesProtein BindingProtein Structure, QuaternaryCas2 protein, E coliCRISPR-Associated ProteinsDNAEndodeoxyribonucleasesEndonucleasesEscherichia coli ProteinsExonucleasesYgbT protein, E colibacterial immunityCas1Cas1-Cas2Cas2CRISPR adaptationCRISPR-CasEscherichia coli (E. coli)exonucleasemicrobiologymolecular biologyprespacer integrationprespacer processingprotein-DNA interactionprotein-nucleic acid interactionprotospacer-adjacent motif (PAM)

Identifiers

PMID31748409
PMCPMC6937570
OpenAlexW2989759193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.