Evidence map›Paper›PMID 31747584›Full record

ArticleMethods (San Diego, Calif.)2020

A lipid mixing assay to accurately quantify the fusion of outer membrane vesicles.

Yehou M D Gnopo, David Putnam

Open access · greenAbstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yehou M D GnopoRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, United States.
David PutnamRobert F. Smith School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, United States; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, United States. Electronic address: dap43@cornell.edu.
Cornell University · US

Funding

Co-Presentation and Delivery of TLR Agonist Combinations with Subunit Antigens to Pathogen-Match the Immune ResponseR01AI139664 · NIAID · CORNELL UNIVERSITY · PI PUTNAM, DAVID A · 2018 to 2022
$2.9M
Effective Mucosal Vaccination through Engineered Outer Membrane VesiclesR21AI137858 · NIAID · CORNELL UNIVERSITY · PI PUTNAM, DAVID A · 2018 to 2019
$425k
NIAID NIH HHS R01 AI139664NIAID NIH HHS R21 AI137858
6 · The paper itself

Abstract

The intermixing of phospholipids from opposing bilayers, or membrane fusion, is a naturally occurring process that can be leveraged to produce hybrid vesicle systems. Optimizing the production of these hybrid vesicles requires accurate, sensitive, and quantitative methods of the lipid mixing that occurs during fusion. A fluorescence-based assay that uses octadecyl-rhodamine B chloride to measure lipid mixing, or R18 assay, was developed by Hoekstra to investigate viral entry almost four decades ago. However, the R18 assay has so far only been used to measure heterotypic fusion events. Consequently, the fusion efficiencies that are calculated from the R18 assay underestimate the total number of fusion events and the true efficiency of vesicle fusions. In this article, we outline the experimental format and data analysis that is necessary to perform the R18 fusion assay and to accurately and reliably measure the true total fusion efficiency of outer membrane vesicles isolated from the Nissle 1917 strain of E. coli.

Indexed as

Membrane FusionBiological AssayCell MembraneEscherichia coliExtracellular VesiclesKineticsLipid BilayersOctoxynolPhospholipidsRhodaminesLipid Bilayersoctadecyl Rhodamine B chlorideOctoxynolPhospholipidsRhodaminesFusion efficiencyLipid mixingMembrane fusionOctadecyl-rhodamine B chloride assayOuter membrane vesicles

Identifiers

PMID31747584
PMCPMC7448229
OpenAlexW2985482631

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.