Evidence map›Paper›PMID 31747401›Full record

ArticlePloS one2019

Detection of Schistosoma japonicum and Oncomelania hupensis quadrasi environmental DNA and its potential utility to schistosomiasis japonica surveillance in the Philippines.

Raffy Jay C Fornillos, Marcello Otake Sato, Ian Kim B Tabios, Megumi Sato, Lydia R Leonardo, Yuichi Chigusa, Toshifumi Minamoto, Mihoko Kikuchi, Emelda R Legaspi, Ian Kendrich C Fontanilla

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Observational
  5. Article
  6. Development of a SYBR Green-Based Real-Time PCR Assay to DetectTropical medicine and infectious disease · 2025
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  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Assessment of schistosomiasis transmission in the River Nile at Greater Cairo using malacological surveys and cercariometry.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2022
    Article
  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Raffy Jay C FornillosDNA Barcoding Laboratory, Institute of Biology, College of Science, University of the Philippines Diliman, Quezon City, Philippines.
Marcello Otake SatoDepartment of Tropical Medicine and Parasitology, Dokkyo Medical University, Tochigi, Japan.ORCID 0000-0002-9204-0602
Ian Kim B TabiosCollege of Medicine, University of the Philippines Manila, Ermita Manilla, Philippines.
Megumi SatoGraduate School of Health Sciences, Niigata, Japan.
Lydia R LeonardoDNA Barcoding Laboratory, Institute of Biology, College of Science, University of the Philippines Diliman, Quezon City, Philippines.
Yuichi ChigusaDepartment of Tropical Medicine and Parasitology, Dokkyo Medical University, Tochigi, Japan.
Toshifumi MinamotoGraduate School of Human Development and Environment, Kobe University, Tsurukabuto, Nada-ku, Kobe, Japan.ORCID 0000-0002-5379-1622
Mihoko KikuchiDepartment of Immunogenetics, Institute of Tropical Medicine, Nagasaki University, Sakamoto, Nagasaki, Japan.
Emelda R LegaspiMedical Zoology Laboratory, Schistosomiasis Research and Training Center, Palo Leyte, Philippines.
Ian Kendrich C FontanillaDNA Barcoding Laboratory, Institute of Biology, College of Science, University of the Philippines Diliman, Quezon City, Philippines.
Dokkyo Medical University · JPNagasaki University · JPUniversity of the East Ramon Magsaysay Memorial Medical Center · PHUniversity of the Philippines Diliman · PHUniversity of the Philippines Manila · PHKobe University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, the prevalence and infection intensity of Schistosoma japonicum in endemic areas of the Philippines have significantly decreased due to yearly population-based treatment strategies, yet transmission rates remain high and uninterrupted. An important indicator of active disease transmission is the presence of Schistosoma japonicum and its snail intermediate host Oncomelania hupensis quadrasi in freshwater habitats. In this study, we sought to apply a species-specific real-time PCR (qPCR) assay for the detection of S. japonicum and O. hupensis quadrasi in freshwater samples using environmental DNA approach that can complement the commonly utilized malacological survey in determining potential transmission foci in order to have a more effective snail surveillance strategy for schistosomiasis japonica in endemic areas. The newly developed assay was specific to S. japonicum and O. hupensis quadrasi with no amplification detected against non-target trematode Fasciola spp. and snails such as Lymnaea spp., Pomacea canaliculata, and Melanoides spp. that typically co-exist in the same environment. The assay effectiveness was determined using 19 environmental water samples collected from Northern Samar (N = 5 sites), Leyte (N = 11 sites) and Compostela Valley (N = 3 sites) and compared to malacological survey for determining O. hupensis quadrasi snail colonies and snail crushing to visualize S. japonicum cercariae. TaqMan qPCR targeting a short fragment of the cytochrome c oxidase subunit 1 (cox1) gene was positive for S. japonicum in 9 sites, for O. hupensis quadrasi in 9 sites, and for both S. japonicum and O. hupensis quadrasi in 5 sampling sites. Moreover, it was able to detect O. hupensis quadrasi in 3 out of 12 sites found negative and 6 out of 7 sites found positive through malacological survey, and in 4 of the 5 snail sites positive for snails with cercariae. Overall, this method can complement malacological surveys for monitoring of schistosomes in endemic areas of the Philippines, especially those with high risk of human infection.

Indexed as

Epidemiological MonitoringAnimalsCercariaDisease VectorsDNA, EnvironmentalHumansPhilippinesSchistosoma japonicumSchistosomiasis japonicaSnailsSpecies SpecificityDNA, Environmental

Identifiers

PMID31747401
PMCPMC6867693
OpenAlexW2991584852

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.