Evidence map›Paper›PMID 31745737›Full record

ArticleMikrochimica acta2019

A fluorescence quenching based gene assay for Escherichia coli O157:H7 using graphene quantum dots and gold nanoparticles.

Suria Mohd Saad, Jaafar Abdullah, Suraya Abd Rashid, Yap Wing Fen, Faridah Salam, Lau Han Yih

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In one paragraph

Article in Mikrochimica acta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Active Quantum Biomaterials-Enhanced Microrobots for Food Safety.Small (Weinheim an der Bergstrasse, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Suria Mohd SaadInstitute of Advanced Technology, University Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Jaafar AbdullahInstitute of Advanced Technology, University Putra Malaysia, 43400, Serdang, Selangor, Malaysia. jafar@upm.edu.my.ORCID 0000-0001-9686-4804
Suraya Abd RashidInstitute of Advanced Technology, University Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Yap Wing FenDepartment of Physics, Faculty of Science, University Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Faridah SalamCentre of Biotechnology and Nanotechnology, MARDI Headquarters, Persiaran MARDI-UPM, 43400, Serdang, Selangor, Malaysia.
Lau Han YihCentre of Biotechnology and Nanotechnology, MARDI Headquarters, Persiaran MARDI-UPM, 43400, Serdang, Selangor, Malaysia.

Funding

Faculti Sains, Universiti Putra Malaysia GP-IPB/2016/9515403Institut Penyelidikan dan Kemajuan Pertanian Malaysia (MY) P-RI-401
6 · The paper itself

Abstract

A fluorometric assay is described for highly sensitive quantification of Escherichia coli O157:H7. Reporter oligos were immobilized on graphene quantum dots (GQDs), and quencher oligos were immobilized on gold nanoparticles (AuNPs). Target DNA was co-hybridized with reporter oligos on the GQDs and quencher oligos on AuNPs. This triggers quenching of fluorescence (with excitation/emission peaks at 400 nm/530 nm). On introducing target into the system, fluorescence is quenched by up to 95% by 100 nM concentrations of target oligos having 20 bp. The response to the fliC gene of E. coli O157:H7 increases with the logarithm of the concentration in the range from 0.1 nM to 150 nM. The limit of detection is 1.1 ± 0.6 nM for n = 3. The selectivity and specificity of the assay was confirmed by evaluating the various oligos sequences and PCR product (fliC gene) amplified from genomic DNA of the food samples spiked with E. coli O157:H7. Graphical abstractSchematic representation of fluorometric assay for highly sensitive quantification of Escherichia coli O157:H7 based on fluorescence quenching gene assay for fliC gene of E. coli O157:H7.

Indexed as

AnimalsCheeseDNA, BacterialEscherichia coli O157Escherichia coli ProteinsFlagellinFood ContaminationGoldGraphiteImmobilized Nucleic AcidsMetal NanoparticlesNucleic Acid HybridizationPoultryQuantum DotsSpectroscopy, Fourier Transform InfraredDNA, BacterialEscherichia coli ProteinsFlagellinFliC protein, E coliGoldGraphiteImmobilized Nucleic AcidsfliC geneFluorophoreFood pathogensQuencherReal samplesSelectivityStatic quenching

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.