Evidence map›Paper›PMID 31745565›Full record

ArticleNucleic acids research2020

Global H-NS counter-silencing by LuxR activates quorum sensing gene expression.

Ryan R Chaparian, Minh L N Tran, Laura C Miller Conrad, Douglas B Rusch, Julia C van Kessel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. The H-NS homologues MvaT and MvaU repress CRISPR-Cas inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Mobile-CRISPRi as a powerful tool for modulatingApplied and environmental microbiology · 2024
    Article
  10. Mitigation ofApplied and environmental microbiology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Nocturnal Acidification: A Coordinating Cue in theInternational journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Overcoming stochastic variations in culture variables to quantify and compare growth curve data.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ryan R ChaparianDepartment of Biology, Indiana University, Bloomington, IN, USA.
Minh L N TranDepartment of Chemistry, San Jose State University, San Jose, CA, USA.
Laura C Miller ConradDepartment of Chemistry, San Jose State University, San Jose, CA, USA.
Douglas B RuschCenter for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA.
Julia C van KesselDepartment of Biology, Indiana University, Bloomington, IN, USA.
Indiana University Bloomington · USSan Jose State University · US

Funding

Quorum sensing regulation of bacterial developmentR35GM124698 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Julia C. van Kessel · 2017 to 2026
$4.1M
Blocking Cationic Antimicrobial Peptide-Resistance in Pseudomonas aeruginosaSC3GM118199 · NIGMS · SAN JOSE STATE UNIVERSITY · PI MILLER CONRAD, LAURA C. · 2016 to 2024
$850k
NIGMS NIH HHS R35 GM124698NIGMS NIH HHS SC3 GM118199
6 · The paper itself

Abstract

Bacteria coordinate cellular behaviors using a cell-cell communication system termed quorum sensing. In Vibrio harveyi, the master quorum sensing transcription factor LuxR directly regulates >100 genes in response to changes in population density. Here, we show that LuxR derepresses quorum sensing loci by competing with H-NS, a global transcriptional repressor that oligomerizes on DNA to form filaments and bridges. We first identified H-NS as a repressor of bioluminescence gene expression, for which LuxR is a required activator. In an hns deletion strain, LuxR is no longer necessary for transcription activation of the bioluminescence genes, suggesting that the primary role of LuxR is to displace H-NS to derepress gene expression. Using RNA-seq and ChIP-seq, we determined that H-NS and LuxR co-regulate and co-occupy 28 promoters driving expression of 63 genes across the genome. ChIP-PCR assays show that as autoinducer concentration increases, LuxR protein accumulates at co-occupied promoters while H-NS protein disperses. LuxR is sufficient to evict H-NS from promoter DNA in vitro, which is dependent on LuxR DNA binding activity. From these findings, we propose a model in which LuxR serves as a counter-silencer at H-NS-repressed quorum sensing loci by disrupting H-NS nucleoprotein complexes that block transcription.

Indexed as

Gene Expression Regulation, BacterialGene SilencingBacterial LoadBacterial ProteinsDNA, BacterialDNA-Binding ProteinsEscherichia coliLuminescent ProteinsPromoter Regions, GeneticQuorum SensingRepressor ProteinsSequence Analysis, RNATrans-ActivatorsTranscription, GeneticVibrioBacterial ProteinsDNA, BacterialDNA-Binding ProteinsH-NS protein, bacteriaLuminescent ProteinsLuxR autoinducer binding proteinsRepressor ProteinsTrans-Activators

Identifiers

PMID31745565
PMCPMC7145609
OpenAlexW2991341056

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.