Evidence map›Paper›PMID 31745156›Full record

ArticleScientific reports2019

Efficient knockout of phytoene desaturase gene using CRISPR/Cas9 in melon.

Isidre Hooghvorst, Camilo López-Cristoffanini, Salvador Nogués

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Development ofFrontiers in genome editing · 2026
    Article
  6. CRISPR/Cas9-MediatedPlants (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Efficient CRISPR/Frontiers in plant science · 2025
    Article
  11. Unlocking the potential of 'Egusi' melon (Frontiers in plant science · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Parthenocarpy inPlants (Basel, Switzerland) · 2023
    Review
  17. Article
  18. OptimisedGenes · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Isidre HooghvorstDepartament de Biologia Evolutiva, Ecologia i Ciencies Ambientals, Secció de Fisiologia Vegetal, Universitat de Barcelona, 08028, Barcelona, España. isidrevander@gmail.com.ORCID http://orcid.org/0000-0001-7937-9647
Camilo López-CristoffaniniDepartament de Biologia Evolutiva, Ecologia i Ciencies Ambientals, Secció de Fisiologia Vegetal, Universitat de Barcelona, 08028, Barcelona, España.ORCID http://orcid.org/0000-0002-2481-6122
Salvador NoguésDepartament de Biologia Evolutiva, Ecologia i Ciencies Ambientals, Secció de Fisiologia Vegetal, Universitat de Barcelona, 08028, Barcelona, España.ORCID http://orcid.org/0000-0002-1694-0924
Universitat de Barcelona · ESClínica Girona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR/Cas9 system has been widely applied in many plant species to induce mutations in the genome for studying gene function and improving crops. However, to our knowledge, there is no report of CRISPR/Cas9-mediated genome editing in melon (Cucumis melo). In our study, phytoene desaturase gene of melon (CmPDS) was selected as target for the CRISPR/Cas9 system with two designed gRNAs, targeting exons 1 and 2. A construct (pHSE-CmPDS) carrying both gRNAs and the Cas9 protein was delivered by PEG-mediated transformation in protoplasts. Mutations were detected in protoplasts for both gRNAs. Subsequently, Agrobacterium-mediated transformation of cotyledonary explants was carried out, and fully albino and chimeric albino plants were successfully regenerated. A regeneration efficiency of 71% of transformed plants was achieved from cotyledonary explants, a 39% of genetic transformed plants were successful gene edited, and finally, a 42-45% of mutation rate was detected by Sanger analysis. In melon protoplasts and plants most mutations were substitutions (91%), followed by insertions (7%) and deletions (2%). We set up a CRISPR/Cas9-mediated genome editing protocol which is efficient and feasible in melon, generating multi-allelic mutations in both genomic target sites of the CmPDS gene showing an albino phenotype easily detectable after only few weeks after Agrobacterium-mediated transformation.

Indexed as

CRISPR-Cas SystemsGene EditingMutationCucurbitaceaeGenome, PlantOxidoreductasesPlant ProteinsPlants, Genetically ModifiedOxidoreductasesphytoene dehydrogenasePlant Proteins

Identifiers

PMID31745156
PMCPMC6863862
OpenAlexW2991079649

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.