Evidence map›Paper›PMID 31745118›Full record

ArticleScientific reports2019

Functional and structural basis of E. coli enolase inhibition by SF2312: a mimic of the carbanion intermediate.

Jolanta Krucinska, Michael N Lombardo, Heidi Erlandsen, Akram Hazeen, Searle S Duay, Jason G Pattis, Victoria L Robinson, Eric R May, Dennis L Wright

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. BeyondMolecular therapy oncolytics · 2023
    Review
  7. Article
  8. Article
  9. Amoxicillin Haptenation ofFrontiers in pharmacology · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jolanta KrucinskaDepartment of Pharmaceutical Sciences, University of Connecticut, 69 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Michael N LombardoDepartment of Pharmaceutical Sciences, University of Connecticut, 69 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Heidi ErlandsenCenter for Open Research Resources & Equipment (COR2E), University of Connecticut, 91 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Akram HazeenDepartment of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Searle S DuayDepartment of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Jason G PattisDepartment of Molecular and Cellular Biology, University of Connecticut, 91 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Victoria L RobinsonDepartment of Molecular and Cellular Biology, University of Connecticut, 91 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Eric R MayDepartment of Molecular and Cellular Biology, University of Connecticut, 91 North Eagleville Road, Storrs, Connecticut, 06269, United States.
Dennis L WrightDepartment of Pharmaceutical Sciences, University of Connecticut, 69 North Eagleville Road, Storrs, Connecticut, 06269, United States. dennis.wright@uconn.edu.
University of Connecticut · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Structural Dynamics of Viral Proteins: Development and Application of Multiscale Computational Methods for Studying Viral Capsids, Proteins and Membrane SystemsR35GM119762 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI Eric Robert May · 2016 to 2026
$4.1M
Targeting Glycolytic Enzymes as an Antibacterial StrategyR21AI140734 · NIAID · UNIVERSITY OF CONNECTICUT STORRS · PI WRIGHT, DENNIS L. · 2018 to 2019
$439k
NIAID NIH HHS R21 AI140734NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R35 GM119762
6 · The paper itself

Abstract

Many years ago, the natural secondary metabolite SF2312, produced by the actinomycete Micromonospora, was reported to display broad spectrum antibacterial properties against both Gram-positive and Gram-negative bacteria. Recent studies have revealed that SF2312, a natural phosphonic acid, functions as a potent inhibitor of human enolase. The mechanism of SF2312 inhibition of bacterial enolase and its role in bacterial growth and reproduction, however, have remained elusive. In this work, we detail a structural analysis of E. coli enolase bound to both SF2312 and its oxidized imide-form. Our studies support a model in which SF2312 acts as an analog of a high energy intermediate formed during the catalytic process. Biochemical, biophysical, computational and kinetic characterization of these compounds confirm that altering features characteristic of a putative carbanion (enolate) intermediate significantly reduces the potency of enzyme inhibition. When SF2312 is combined with fosfomycin in the presence of glucose-6 phosphate, significant synergy is observed. This suggests the two agents could be used as a potent combination, targeting distinct cellular mechanism for the treatment of bacterial infections. Together, our studies rationalize the structure-activity relationships for these phosphonates and validate enolase as a promising target for antibiotic discovery.

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsCrystallography, X-RayEscherichia coliHumansModels, MolecularOrganophosphonatesPhosphopyruvate HydrataseProtein ConformationPyrrolidinonesSequence HomologyStructure-Activity Relationship(1,5-dihydroxy-2-oxopyrrolidin-3-yl)phosphonic acidAnti-Bacterial AgentsOrganophosphonatesPhosphopyruvate HydratasePyrrolidinones

Identifiers

PMID31745118
PMCPMC6863902
OpenAlexW2990838964

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.