Evidence map›Paper›PMID 31745093›Full record

ArticleNature communications2019

Embryonic progenitor pools generate diversity in fine-scale excitatory cortical subnetworks.

Tommas J Ellender, Sophie V Avery, Kashif Mahfooz, Jakub Scaber, Alexander von Klemperer, Sophie L Nixon, Matthew J Buchan, Joram J van Rheede, Aleksandra Gatti, Cameron Waites and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Optogenetic Determination of Dynamic and Cell-Type-Specific Inhibitory Reversal Potentials.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  10. Review
  11. Patch-seq: Advances and Biological Applications.Cellular and molecular neurobiology · 2023
    Review
  12. Article
  13. Bayesian Mapping of the Striatal Microcircuit Reveals Robust Asymmetries in the Probabilities and Distances of Connections.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  14. From Progenitors to Progeny: Shaping Striatal Circuit Development and Function.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Review
  15. Article
  16. Patch-seq: Past, Present, and Future.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Tommas J EllenderDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0001-9787-3307
Sophie V AveryDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0001-6604-0257
Kashif MahfoozDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0002-9218-6927
Jakub ScaberMRC Computational Genomics Analysis and Training Programme (CGAT), MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, Oxford, OX3 9DS, UK.ORCID http://orcid.org/0000-0003-0146-1821
Alexander von KlempererDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.
Sophie L NixonDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0003-4375-434X
Matthew J BuchanDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0002-6378-5015
Joram J van RheedeDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0001-8164-8594
Aleksandra GattiDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0002-5164-1487
Cameron WaitesDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0001-6926-4643
Hania J PavlouMRC Computational Genomics Analysis and Training Programme (CGAT), MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, Oxford, OX3 9DS, UK.
David SimsMRC Computational Genomics Analysis and Training Programme (CGAT), MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, Oxford, OX3 9DS, UK.
Sarah E NeweyDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.ORCID http://orcid.org/0000-0001-8941-4039
Colin J AkermanDepartment of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK. colin.akerman@pharm.ox.ac.uk.ORCID http://orcid.org/0000-0001-6844-4984
University of Oxford · GBMRC Weatherall Institute of Molecular Medicine · GBMansfield University · US

Funding

Medical Research Council MC_PC_15065Medical Research Council MR/M009599/1Wellcome Trust
6 · The paper itself

Abstract

The mammalian neocortex is characterized by a variety of neuronal cell types and precise arrangements of synaptic connections, but the processes that generate this diversity are poorly understood. Here we examine how a pool of embryonic progenitor cells consisting of apical intermediate progenitors (aIPs) contribute to diversity within the upper layers of mouse cortex. In utero labeling combined with single-cell RNA-sequencing reveals that aIPs can generate transcriptionally defined glutamatergic cell types, when compared to neighboring neurons born from other embryonic progenitor pools. Whilst sharing layer-associated morphological and functional properties, simultaneous patch clamp recordings and optogenetic studies reveal that aIP-derived neurons exhibit systematic biases in both their intralaminar monosynaptic connectivity and the post-synaptic partners that they target within deeper layers of cortex. Multiple cortical progenitor pools therefore represent an important factor in establishing diversity amongst local and long-range fine-scale glutamatergic connectivity, which generates subnetworks for routing excitatory synaptic information.

Indexed as

Action PotentialsAnimalsExcitatory Postsynaptic PotentialsMice, Inbred C57BLNeocortexNerve NetNeuronsOptogeneticsPatch-Clamp TechniquesSynapses

Identifiers

PMID31745093
PMCPMC6863870
OpenAlexW2987372156

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.