Evidence map›Paper›PMID 31744855›Full record

ArticleMolecular & cellular proteomics : MCP2020

The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Juan Antonio Vizcaíno, Peter Kubiniok, Kevin A Kovalchik, Qing Ma, Jérôme D Duquette, Ian Mongrain, Eric W Deutsch, Bjoern Peters, Alessandro Sette, Isabelle Sirois and 1 more

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Personalizing DNA Cancer Vaccines.Journal of personalized medicine · 2025
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. The Immunopeptidomics Ontology (ImPO).Database : the journal of biological databases and curation · 2024
    Article
  17. Facts and Hopes in Immunotherapy Strategies Targeting Antigens Derived from KRAS Mutations.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Juan Antonio VizcaínoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.
Peter KubiniokCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada.
Kevin A KovalchikCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada.
Qing MaCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada; School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON K1N 6N5, Canada.
Jérôme D DuquetteCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada.
Ian MongrainUniversité de Montréal Beaulieu-Saucier Pharmacogenomics Centre, Montreal, QC, Canada; Montreal Heart Institute, Montreal, QC, Canada.
Eric W DeutschInstitute for Systems Biology, Seattle, Washington, 98109.
Bjoern PetersLa Jolla Institute for Allergy and Immunology, La Jolla, California, 92037.
Alessandro SetteLa Jolla Institute for Allergy and Immunology, La Jolla, California, 92037.
Isabelle SiroisCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada.
Etienne CaronCHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada; Department of Pathology and Cellular Biology, Faculty of Medicine, Université de Montréal, QC H3T 1J4, Canada. Electronic address: etienne.caron@umontreal.ca.

Funding

Biotechnology and Biological Sciences Research Council BB/P024599/1Wellcome Trust 208391
6 · The paper itself

Abstract

The science that investigates the ensembles of all peptides associated to human leukocyte antigen (HLA) molecules is termed "immunopeptidomics" and is typically driven by mass spectrometry (MS) technologies. Recent advances in MS technologies, neoantigen discovery and cancer immunotherapy have catalyzed the launch of the Human Immunopeptidome Project (HIPP) with the goal of providing a complete map of the human immunopeptidome and making the technology so robust that it will be available in every clinic. Here, we provide a long-term perspective of the field and we use this framework to explore how we think the completion of the HIPP will truly impact the society in the future. In this context, we introduce the concept of immunopeptidome-wide association studies (IWAS). We highlight the importance of large cohort studies for the future and how applying quantitative immunopeptidomics at population scale may provide a new look at individual predisposition to common immune diseases as well as responsiveness to vaccines and immunotherapies. Through this vision, we aim to provide a fresh view of the field to stimulate new discussions within the community, and present what we see as the key challenges for the future for unlocking the full potential of immunopeptidomics in this era of precision medicine.

Indexed as

AllelesAutoimmune DiseasesCohort StudiesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHumansImmunotherapyInfectionsMass SpectrometryNeoplasmsPeptidesPrecision MedicinePrognosisHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensPeptidescancer therapeuticsHLA/MHCImmunologyimmunopeptidomeinfectious diseaseIWASmass spectrometrypeptides

Identifiers

PMID31744855
PMCPMC6944237

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.