Evidence map›Paper›PMID 31742863›Full record

ArticleAging cell2020

Rap1-mediated nucleosome displacement can regulate gene expression in senescent cells without impacting the pace of senescence.

Shufei Song, Javier V Perez, William Svitko, M Daniel Ricketts, Elliot Dean, David Schultz, Ronen Marmorstein, F Brad Johnson

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Fundamentals of G-quadruplex biology.Annual reports in medicinal chemistry · 2020
    Article
  11. Shelterin Complex at Telomeres: Implications in Ageing.Clinical interventions in aging · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Shufei SongDepartment of Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-3084-8013
Javier V PerezDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.
William SvitkoDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.
M Daniel RickettsDepartment of Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Elliot DeanHigh-Throughput Screening Core, University of Pennsylvania, Philadelphia, PA, USA.
David SchultzHigh-Throughput Screening Core, University of Pennsylvania, Philadelphia, PA, USA.
Ronen MarmorsteinDepartment of Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-4373-4752
F Brad JohnsonDepartment of Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-7443-7227
University of Pennsylvania · USCancer Research Institute · USHigh Throughput Biology (United States) · USInstitute on Aging · US

Funding

STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI GARCIA, BENJAMIN A · 2008 to 2022
$28.3M
American Heart Association 15PRE25710161NIA NIH HHS P01 AG031862
6 · The paper itself

Abstract

Cell senescence is accompanied, and in part mediated, by changes in chromatin, including histone losses, but underlying mechanisms are not well understood. We reported previously that during yeast cell senescence driven by telomere shortening, the telomeric protein Rap1 plays a major role in reprogramming gene expression by relocalizing hundreds of new target genes (called NRTS, for new Rap1 targets at senescence) to the promoters. This leads to two types of histone loss: Rap1 lowers histone level globally by repressing histone gene expression, and it also causes local nucleosome displacement at the promoters of upregulated NRTS. Here, we present evidence of direct binding between Rap1 and histone H3/H4 heterotetramers, and map amino acids involved in the interaction within the Rap1 SANT domain to amino acids 392-394 (SHY). Introduction of a point mutation within the native RAP1 locus that converts these residues to alanines (RAP1

Indexed as

Gene Expression Regulation, FungalNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTranscription FactorsNucleosomesRAP1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTranscription Factorscellular senescencepace of senescencepioneer transcription factorRap1

Identifiers

PMID31742863
PMCPMC6974733
OpenAlexW2991529818

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.