Evidence map›Paper›PMID 31742539›Full record

ArticleEmerging infectious diseases2019

Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014-2016.

Nigel P French, Ji Zhang, Glen P Carter, Anne C Midwinter, Patrick J Biggs, Kristin Dyet, Brent J Gilpin, Danielle J Ingle, Kerry Mulqueen, Lynn E Rogers and 5 more

Open access · diamondAbstract readHistorical Article
In one paragraph

Article in Emerging infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Detection of Antibiotic-ResistantJournal of the Royal Society of New Zealand · 2026
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  2. Longitudinal survey investigating vectors and reservoirs forApplied and environmental microbiology · 2025
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  8. Genomic insight intoFrontiers in veterinary science · 2023
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  9. Review
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  12. Whole genome sequencing data used for surveillance ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2021
    Article
  13. Emergence of a NovelAntimicrobial agents and chemotherapy · 2020
    Article
  14. Article
  15. Occurrence ofMicroorganisms · 2020
    Article
  16. Characterization and Prevalence ofFrontiers in veterinary science · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Nigel P French
Ji Zhang
Glen P Carter
Anne C Midwinter
Patrick J Biggs
Kristin Dyet
Brent J Gilpin
Danielle J Ingle
Kerry Mulqueen
Lynn E Rogers
David A Wilkinson
Sabrina S Greening
Petra Muellner
Ahmed Fayaz
Deborah A Williamson
Australian National University · AUMassey University · NZBuilding Research Association of New Zealand · NZNew Zealand Institute for Public Health and Forensic Science · NZThe University of Melbourne · AUGovernment of the Northern Territory · AUPlant & Food Research · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In 2014, antimicrobial drug-resistant Campylobacter jejuni sequence type 6964 emerged contemporaneously in poultry from 3 supply companies in the North Island of New Zealand and as a major cause of campylobacteriosis in humans in New Zealand. This lineage, not previously identified in New Zealand, was resistant to tetracycline and fluoroquinolones. Genomic analysis revealed divergence into 2 major clades; both clades were associated with human infection, 1 with poultry companies A and B and the other with company C. Accessory genome evolution was associated with a plasmid, phage insertions, and natural transformation. We hypothesize that the tetO gene and a phage were inserted into the chromosome after conjugation, leaving a remnant plasmid that was lost from isolates from company C. The emergence and rapid spread of a resistant clone of C. jejuni in New Zealand, coupled with evolutionary change in the accessory genome, demonstrate the need for ongoing Campylobacter surveillance among poultry and humans.

Indexed as

Genome, BacterialAnimalsAnti-Bacterial AgentsCampylobacter InfectionsCampylobacter jejuniCommunicable Diseases, EmergingDrug Resistance, BacterialFluoroquinolonesGenomicsHistory, 21st CenturyHumansMultilocus Sequence TypingNew ZealandPhylogenyPlasmidsPolymorphism, Single NucleotideAnti-Bacterial AgentsFluoroquinolonesTetracyclineantimicrobial resistancebacteriaCampylobacter jejunifluoroquinoloneNew Zealandplasmidpoultrytetracycline

Identifiers

PMID31742539
PMCPMC6874264
OpenAlexW2982596781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.