Evidence map›Paper›PMID 31741644›Full record

ArticleEthiopian journal of health sciences2019

Detection of

Hossein Ali Rahdar, Mohammad Reza Salehi, Abass Bahador, Seyedesomaye Jasemi, Morteza Karami-Zarandi, Malehe Hasan Nejad, Shahram Shahraki-Zahedani, Jafar Amani, Seifu Gizaw Feyisa, Jalil Kardan-Yamchi and 1 more

Abstract read
In one paragraph

Article in Ethiopian journal of health sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hossein Ali RahdarDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Mohammad Reza SalehiDepartment of Infectious and Tropical Diseases, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran.
Abass BahadorDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Seyedesomaye JasemiDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Morteza Karami-ZarandiDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Malehe Hasan NejadDepartment of Infectious and Tropical Diseases, Imam Khomeini Hospital Complex, Tehran University of Medical Sciences, Tehran, Iran.
Shahram Shahraki-ZahedaniDepartment of Medical Microbiology, School of Medicine, Zahedan University of Medical Sciences, Zahedan, Iran.
Jafar AmaniBaqiyatallah University of Medical Sciences, Tehran, Iran.
Seifu Gizaw FeyisaDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Jalil Kardan-YamchiDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Mohammad Mehdi FeizabadiDepartment of Medical Microbiology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNocardia, Streptomyces and Rhodococcus are life threatening opportunistic pathogens under immunodeficiency conditions, particularly among patients infected with HIV. Rapid and accurate detection of these infections can improve immune health quality, patient management and appropriate treatment. The aim of this study was to design a novel multiplex-PCR assay for rapid diagnosis of these three organisms directly from bronchoalveolar lavage (BAL) specimens of patients infected with HIV.

methodsThe genus specific primers were designed for direct-detection of Nocardia, Streptomyces and Rhodococcus in a single tube multiplex PCR. This PCR specifically amplified the target genes from pure cultures. It subsequently was applied on BAL specimens of 29 HIV positive patients that had previously been culture negative for actinomycete bacteria, of which Nocardia, Streptomyces and Rhodococcus are members.

resultsOf 29 respiratory clinical specimens, there were positive for Nocardia spp. and one was positive for Streptomyces spp using the multiplex PCR assay. The sequencing of the PCR products identified the species as Nocardia cyriacigeorgica (n=2), Nocardia farcinica and Streptomyces albus.

conclusionThis novel multiplex PCR assay yielded reliable results for accurate identification of Nocardia, Streptomyces and Rhodococcus from BAL while the results of bacterial culture were negative.

Indexed as

Actinomycetales InfectionsAdultBronchoalveolar LavageFemaleHIV InfectionsHumansIranMaleMiddle AgedMultiplex Polymerase Chain ReactionNocardiaNocardia InfectionsRhodococcusStreptomycesHIVInfectionMultiplex PCRNocardiaRhodococcusStreptomyces

Identifiers

PMID31741644
PMCPMC6842716

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.