Evidence map›Paper›PMID 31741433›Full record

ArticleeLife2019

Genome-wide CRISPR screening reveals genetic modifiers of mutant EGFR dependence in human NSCLC.

Hao Zeng, Johnny Castillo-Cabrera, Mika Manser, Bo Lu, Zinger Yang, Vaik Strande, Damien Begue, Raffaella Zamponi, Shumei Qiu, Frederic Sigoillot and 8 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 2 countries.

Hao ZengChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.ORCID 0000-0003-4967-9555
Johnny Castillo-CabreraChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Mika ManserOncology Disease Area, Novartis Institutes for Biomedical Research, Cambridge, United States.
Bo LuChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Zinger YangChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.ORCID 0000-0001-8543-4841
Vaik StrandeAnalytical Sciences and Imaging, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Damien BegueAnalytical Sciences and Imaging, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Raffaella ZamponiChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Shumei QiuOncology Disease Area, Novartis Institutes for Biomedical Research, Cambridge, United States.
Frederic SigoillotChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Qiong WangChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Alicia LindemanChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
John S Reece-HoyesChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Carsten RussChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Debora BonenfantAnalytical Sciences and Imaging, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Xiaomo JiangChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Youzhen WangOncology Disease Area, Novartis Institutes for Biomedical Research, Cambridge, United States.
Feng CongChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Cambridge, United States.
Novartis (Switzerland) · CHNovartis (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

EGFR-mutant NSCLCs frequently respond to EGFR tyrosine kinase inhibitors (TKIs). However, the responses are not durable, and the magnitude of tumor regression is variable, suggesting the existence of genetic modifiers of EGFR dependency. Here, we applied a genome-wide CRISPR-Cas9 screening to identify genetic determinants of EGFR TKI sensitivity and uncovered putative candidates. We show that knockout of

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsA549 CellsAdaptor Proteins, Signal TransducingAnimalsCarcinoma, Non-Small-Cell LungCell Line, TumorCullin ProteinsErbB ReceptorsFemaleGene Expression Regulation, NeoplasticGene Knockout TechniquesGuanine Nucleotide Exchange FactorsHEK293 CellsHumansMethionyl AminopeptidasesAdaptor Proteins, Signal TransducingARIH2 protein, humanCUL5 protein, humanCullin ProteinsEGFR protein, humanErbB ReceptorsGuanine Nucleotide Exchange FactorsLPAR2 protein, humanMETAP2 protein, humanMethionyl AminopeptidasesReceptors, Lysophosphatidic AcidrhoA GTP-Binding ProteinRHOA protein, humanRic8A protein, humanTranscription FactorsUbiquitin-Protein LigasesYAP1 protein, humanYAP-Signaling ProteinsARIH2-CUL5 complexcancer biologycell biologyCRISPR screenEGFR TKI resistanceGPCR signalinghumanRIC8AYAP signaling

Identifiers

PMID31741433
PMCPMC6927754
OpenAlexW2989919747

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.