Evidence map›Paper›PMID 31740840›Full record

ArticleNature biotechnology2019

Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing.

Pay Giesselmann, Björn Brändl, Etienne Raimondeau, Rebecca Bowen, Christian Rohrandt, Rashmi Tandon, Helene Kretzmer, Günter Assum, Christina Galonska, Reiner Siebert and 9 more

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05765864 (Influences on and Prevention of Self-harm Behaviour Among the Most At-risk Adolescents), which is not on this map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05765864 recruitingnot on this mapstarted 2023, after this paper: background citation

Influences on and Prevention of Self-harm Behaviour Among the Most At-risk Adolescents

TypeobservationalSponsorUniversity of Ljubljana, Faculty of MedicineRan2023 to 2025Enrolled400ConditionsSelf-harm, Personality Disorder, Borderline, Epigenetic Disorder, Non-Suicidal Self InjuryArmsEnrollment questionnaire, General questionnaire1, General questionnaire2, General questionnaire3, Columbia Suicide Severity Rating Scale (CSSRS), The Brief Non-Suicidal Self-Injury Assessment Tool (B-NSSI-AT), Experiences in Close Relationships-Relationship Structures (ECR-RS), Trauma Symptom Checklist for Children (TSCC)
3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Pay Giesselmann *Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0002-1227-897X
Björn Brändl *Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Etienne RaimondeauOxford Nanopore Technologies, Oxford, UK.
Rebecca BowenOxford Nanopore Technologies, Oxford, UK.
Christian RohrandtKiel University of Applied Sciences, Institute for Communications Technologies and Embedded Systems, Kiel, Germany.ORCID http://orcid.org/0000-0002-3661-1183
Rashmi TandonUniversitätsklinikum Schleswig-Holstein Campus Kiel, Zentrum für Integrative Psychiatrie gGmbH, Kiel, Germany.
Helene KretzmerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Günter AssumInstitute for Human Genetics, Ulm University and Ulm University Medical Center, Ulm, Germany.
Christina GalonskaDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Reiner SiebertInstitute for Human Genetics, Ulm University and Ulm University Medical Center, Ulm, Germany.
Ole AmmerpohlInstitute for Human Genetics, Ulm University and Ulm University Medical Center, Ulm, Germany.
Andrew HeronOxford Nanopore Technologies, Oxford, UK.
Susanne A SchneiderDepartment of Neurology, Ludwig-Maximilians-Universität, Munich, Germany.
Julia LadewigCentral Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Philipp KochCentral Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Bernhard M SchuldtUniversitätsklinikum Schleswig-Holstein Campus Kiel, Zentrum für Integrative Psychiatrie gGmbH, Kiel, Germany.
James E GrahamOxford Nanopore Technologies, Oxford, UK.
Alexander MeissnerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0001-8646-7469
Franz-Josef MüllerDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany. franz-josef.mueller@uksh.de.ORCID http://orcid.org/0000-0001-9478-8430

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expansions of short tandem repeats are genetic variants that have been implicated in several neuropsychiatric and other disorders, but their assessment remains challenging with current polymerase-based methods

Indexed as

AlgorithmsAmyotrophic Lateral SclerosisC9orf72 ProteinCells, CulturedCRISPR-Cas SystemsDNA MethylationGenomicsHumansMicrosatellite RepeatsNanoporesNanopore SequencingC9orf72 ProteinC9orf72 protein, human

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.