Evidence map›Paper›PMID 31740816›Full record

ArticleNature methods2020

Time-resolved serial femtosecond crystallography at the European XFEL.

Suraj Pandey, Richard Bean, Tokushi Sato, Ishwor Poudyal, Johan Bielecki, Jorvani Cruz Villarreal, Oleksandr Yefanov, Valerio Mariani, Thomas A White, Christopher Kupitz and 38 more

Abstract read
In one paragraph

Article in Nature methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

  1. Article
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  3. Super Time-Resolved Tomography.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  14. SFCalculator: connecting deep generative models and crystallography.bioRxiv : the preprint server for biology · 2025
    Article
  15. Article
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  19. Article
  20. Journal of applied crystallography · 2024
    Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors.

Suraj Pandey *Physics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Richard Bean *European XFEL GmbH, Schenefeld, Germany.
Tokushi Sato *European XFEL GmbH, Schenefeld, Germany.
Ishwor PoudyalPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Johan BieleckiEuropean XFEL GmbH, Schenefeld, Germany.
Jorvani Cruz VillarrealSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0002-6762-7348
Oleksandr YefanovCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Valerio MarianiCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Thomas A WhiteCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0002-8407-0270
Christopher KupitzLinac Coherent Light Source, Stanford Linear Accelerator Center, National Accelerator Laboratory, Menlo Park, CA, USA.
Mark HunterLinac Coherent Light Source, Stanford Linear Accelerator Center, National Accelerator Laboratory, Menlo Park, CA, USA.
Mohamed H AbdellatifCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0002-3194-7411
Saša BajtDeutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0002-7163-7602
Valerii BondarEuropean XFEL GmbH, Schenefeld, Germany.
Austin EchelmeierSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0001-6127-3879
Diandra DopplerSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
Moritz EmonsEuropean XFEL GmbH, Schenefeld, Germany.
Matthias FrankLawrence Livermore National Laboratory, Livermore, CA, USA.ORCID http://orcid.org/0000-0002-5244-0791
Raimund FrommeSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0003-4835-1080
Yaroslav GevorkovCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0001-9273-7648
Gabriele GiovanettiEuropean XFEL GmbH, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-4804-7006
Man JiangEuropean XFEL GmbH, Schenefeld, Germany.
Daihyun KimSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
Yoonhee KimEuropean XFEL GmbH, Schenefeld, Germany.
Henry KirkwoodEuropean XFEL GmbH, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-6792-3844
Anna KlimovskaiaEuropean XFEL GmbH, Schenefeld, Germany.
Juraj KnoskaCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Faisal H M KouaCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Romain LetrunEuropean XFEL GmbH, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-0569-5193
Stella LisovaPhysics Department, Arizona State University, Tempe, AZ, USA.
Luis MaiaEuropean XFEL GmbH, Schenefeld, Germany.
Victoria MazalovaCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0003-2613-7868
Domingo MezaIntegrated Biology Infrastructure Life-Science Facility at the European XFEL, Schenefeld, Germany.
Thomas MichelatEuropean XFEL GmbH, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-5689-8759
Abbas OurmazdPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0001-9946-3889
Guido PalmerEuropean XFEL GmbH, Schenefeld, Germany.
Marco RamilliEuropean XFEL GmbH, Schenefeld, Germany.
Robin SchubertIntegrated Biology Infrastructure Life-Science Facility at the European XFEL, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-6213-2872
Peter SchwanderPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Alessandro SilenziEuropean XFEL GmbH, Schenefeld, Germany.
Jolanta Sztuk-DambietzEuropean XFEL GmbH, Schenefeld, Germany.
Alexandra TolstikovaCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Alexandra RosSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0001-7709-8331
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Petra FrommeSchool of Molecular Sciences, and Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
Adrian P MancusoEuropean XFEL GmbH, Schenefeld, Germany.
Marius SchmidtPhysics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA. smarius@uwm.edu.ORCID http://orcid.org/0000-0002-0962-9468

Funding

Technology development for biological imaging with x-ray free electron lasersR01GM117342 · NIGMS · LAWRENCE LIVERMORE NATIONAL SECURITY, LLC · PI FRANK, MATTHIAS · 2016 to 2024
$4.8M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM117342U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM095583
6 · The paper itself

Abstract

The European XFEL (EuXFEL) is a 3.4-km long X-ray source, which produces femtosecond, ultrabrilliant and spatially coherent X-ray pulses at megahertz (MHz) repetition rates. This X-ray source has been designed to enable the observation of ultrafast processes with near-atomic spatial resolution. Time-resolved crystallographic investigations on biological macromolecules belong to an important class of experiments that explore fundamental and functional structural displacements in these molecules. Due to the unusual MHz X-ray pulse structure at the EuXFEL, these experiments are challenging. Here, we demonstrate how a biological reaction can be followed on ultrafast timescales at the EuXFEL. We investigate the picosecond time range in the photocycle of photoactive yellow protein (PYP) with MHz X-ray pulse rates. We show that difference electron density maps of excellent quality can be obtained. The results connect the previously explored femtosecond PYP dynamics to timescales accessible at synchrotrons. This opens the door to a wide range of time-resolved studies at the EuXFEL.

Indexed as

Protein ConformationBacterial ProteinsCrystallography, X-RayLightModels, MolecularPhotoreceptors, MicrobialTime FactorsBacterial Proteinsphotoactive yellow protein, BacteriaPhotoreceptors, Microbial

Identifiers

PMID31740816
PMCPMC9113060

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.