Evidence map›Paper›PMID 31740787›Full record

ArticleOncogene2020

NER-factor DDB2 regulates HIF1α and hypoxia-response genes in HNSCC.

Prashant V Bommi, Vaibhav Chand, Nishit K Mukhopadhyay, Pradip Raychaudhuri, Srilata Bagchi

Open access · greenAbstract read
In one paragraph

Article in Oncogene, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Prashant V BommiDepartment of Oral Biology, College of Dentistry, University of Illinois at Chicago, 801 S, Paulina Street, Chicago, IL, 60612, USA.ORCID http://orcid.org/0000-0002-9457-1730
Vaibhav ChandDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, 900 S Ashland Avenue, Chicago, IL, 60607, USA.
Nishit K MukhopadhyayDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, 900 S Ashland Avenue, Chicago, IL, 60607, USA.
Pradip RaychaudhuriDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, 900 S Ashland Avenue, Chicago, IL, 60607, USA. pradip@uic.edu.
Srilata BagchiDepartment of Oral Biology, College of Dentistry, University of Illinois at Chicago, 801 S, Paulina Street, Chicago, IL, 60612, USA. sbagchi@uic.edu.
University of Illinois Chicago · USThe University of Texas MD Anderson Cancer Center · US

Funding

DNA Damage Response and DDBR01CA156164 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BAGCHI, SRILATA, RAYCHAUDHURI, PRADIP · 2010 to 2014
$1.6M
DDB2 is a regulator of HIF1A and EMT in HNSCCR03CA227308 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BAGCHI, SRILATA · 2019 to 2020
$160k
NCI NIH HHS R01 CA156164NCI NIH HHS R03 CA227308
6 · The paper itself

Abstract

Cancers in the oral/head & neck region (HNSCC) are aggressive due to high incidence of recurrence and distant metastasis. One prominent feature of aggressive HNSCC is the presence of severely hypoxic regions in tumors and activation of hypoxia-inducible factors (HIFs). In this study, we report that the XPE gene product DDB2 (damaged DNA binding protein 2), a nucleotide excision repair protein, is upregulated by hypoxia. Moreover, DDB2 inhibits HIF1α in HNSCC cells. It inhibits HIF1α in both normoxia and hypoxia by reducing mRNA expression. Knockdown of DDB2 enhances the expression of angiogenic markers and promotes tumor growth in a xenograft model. We show that DDB2 binds to an upstream promoter element in the HIF1Α gene and promotes histone H3K9 trimethylation around the binding site by recruiting Suv39h1. Also, we provide evidence that DDB2 has a significant suppressive effect on expression of the endogenous markers of hypoxia that are also prognostic indicators in HNSCC. Together, these results describe a new mechanism of hypoxia regulation that opposes expression of HIF1Α mRNA and the hypoxia-response genes.

Indexed as

Tumor HypoxiaCell Line, TumorDNA-Binding ProteinsGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansHypoxia-Inducible Factor 1, alpha SubunitSquamous Cell Carcinoma of Head and NeckDDB2 protein, humanDNA-Binding ProteinsHIF1A protein, humanHypoxia-Inducible Factor 1, alpha Subunit

Identifiers

PMID31740787
PMCPMC11095046
OpenAlexW2987192756

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.