Evidence map›Paper›PMID 31740770›Full record

ArticleNature plants2019

Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis.

Myung-Hee Kim, Jieun Jeon, Seulbee Lee, Jae Ho Lee, Lei Gao, Byung-Hoon Lee, Jeong Mee Park, Yun Ju Kim, June M Kwak

Abstract read
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In one paragraph

Article in Nature plants, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Myung-Hee KimCenter for Plant Aging Research, Institute for Basic Science, Daegu, Republic of Korea.
Jieun JeonCenter for Plant Aging Research, Institute for Basic Science, Daegu, Republic of Korea.
Seulbee LeeCenter for Plant Aging Research, Institute for Basic Science, Daegu, Republic of Korea.
Jae Ho LeeCenter for Plant Aging Research, Institute for Basic Science, Daegu, Republic of Korea.
Lei GaoGuangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China.ORCID http://orcid.org/0000-0002-6488-0292
Byung-Hoon LeeDepartment of New Biology, DGIST, Daegu, Republic of Korea.
Jeong Mee ParkPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Yun Ju KimCenter for Plant Aging Research, Institute for Basic Science, Daegu, Republic of Korea. yjkim77@ibs.re.kr.ORCID http://orcid.org/0000-0003-4284-9144
June M KwakDepartment of New Biology, DGIST, Daegu, Republic of Korea. jkwak@dgist.ac.kr.ORCID http://orcid.org/0000-0001-6948-5155
Daegu Gyeongbuk Institute of Science and Technology · KRInstitute for Basic Science · KRKorea Research Institute of Bioscience and Biotechnology · KRShenzhen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA quality control (RQC) and post-transcriptional gene silencing (PTGS) target and degrade aberrant endogenous RNAs and foreign RNAs, contributing to homeostasis of cellular RNAs. In plants, RQC and PTGS compete for foreign and selected endogenous RNAs; however, little is known about the mechanism interconnecting the two pathways. Using a reporter system designed for monitoring PTGS, we revealed that the 26S proteasome subunit RPT2a enhances transgene PTGS by promoting the accumulation of transgene-derived short interfering RNAs without affecting their biogenesis. RPT2a physically associated with a subset of RQC components and downregulated the protein level. Overexpression of the RQC components interfered with transgene silencing, and impairment of the RQC machinery reinforced transgene PTGS attenuated by rpt2a. Overall, we demonstrate that the 26S proteasome subunit RPT2a promotes PTGS by repressing the RQC machinery to control foreign RNAs.

Indexed as

RNA InterferenceArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantProteasome Endopeptidase ComplexRNA, PlantTransgenesArabidopsis ProteinsATP dependent 26S proteaseProteasome Endopeptidase ComplexRNA, PlantRPT2a protein, Arabidopsis

Identifiers

PMID31740770
OpenAlexW2984067625

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.