Evidence map›Paper›PMID 31740741›Full record

ArticleScientific reports2019

Metatranscriptomic Analysis of Multiple Environmental Stresses Identifies RAP2.4 Gene Associated with Arabidopsis Immunity to Botrytis cinerea.

Arjun Sham, Hibatullah Al-Ashram, Kenna Whitley, Rabah Iratni, Khaled A El-Tarabily, Synan F AbuQamar

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Genome Structures and Evolution Analysis ofFrontiers in plant science · 2022
    Article
  8. Review
  9. Biocontrol Potential of Endophytic Actinobacteria againstJournal of fungi (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Co-expression Networks in Predicting Transcriptional Gene Regulation.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Arjun ShamDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE.
Hibatullah Al-AshramDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE.
Kenna WhitleyDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE.
Rabah IratniDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE.
Khaled A El-TarabilyDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE. ktarabily@uaeu.ac.ae.
Synan F AbuQamarDepartment of Biology, United Arab Emirates University, 15551, Al-Ain, UAE. sabuqamar@uaeu.ac.ae.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we aimed to identify common genetic components during stress response responsible for crosstalk among stresses, and to determine the role of differentially expressed genes in Arabidopsis-Botrytis cinerea interaction. Of 1,554 B. cinerea up-regulated genes, 24%, 1.4% and 14% were induced by biotic, abiotic and hormonal treatments, respectively. About 18%, 2.5% and 22% of B. cinerea down-regulated genes were also repressed by the same stress groups. Our transcriptomic analysis indicates that plant responses to all tested stresses can be mediated by commonly regulated genes; and protein-protein interaction network confirms the cross-interaction between proteins regulated by these genes. Upon challenges to individual or multiple stress(es), accumulation of signaling molecules (e.g. hormones) plays a major role in the activation of downstream defense responses. In silico gene analyses enabled us to assess the involvement of RAP2.4 (related to AP2.4) in plant immunity. Arabidopsis RAP2.4 was repressed by B. cinerea, and its mutants enhanced resistance to the same pathogen. To the best of our knowledge, this is the first report demonstrating the role of RAP2.4 in plant defense against B. cinerea. This research can provide a basis for breeding programs to increase tolerance and improve yield performance in crops.

Indexed as

Adaptation, PhysiologicalArabidopsisArabidopsis ProteinsBotrytisDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantHost-Pathogen InteractionsPlant DiseasesProtein Interaction MapsSignal TransductionStress, PhysiologicalTranscription FactorsArabidopsis ProteinsTranscription FactorsWIND1 protein, Arabidopsis

Identifiers

PMID31740741
PMCPMC6861241

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.