Evidence map›Paper›PMID 31740623›Full record

ArticleAging2019

Identification of prognostic genes in the acute myeloid leukemia microenvironment.

Shaoxin Huang, Biyu Zhang, Wenyan Fan, Qihan Zhao, Lei Yang, Wang Xin, Denggang Fu

Abstract read
In one paragraph

Article in Aging, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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  10. A CD8Frontiers in immunology · 2024
    Article
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  12. Development of anMolecular therapy. Methods & clinical development · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shaoxin HuangSchool of Basic Medicine, Jiujiang University, Jiujiang, Jiangxi 332005, China.
Biyu ZhangSchool of Pharmacy and Life Science, Jiujiang University, Jiujiang, Jiangxi 332005, China.
Wenyan FanSchool of Basic Medicine, Jiujiang University, Jiujiang, Jiangxi 332005, China.
Qihan ZhaoSchool of Basic Medicine, Jiujiang University, Jiujiang, Jiangxi 332005, China.
Lei YangKey Laboratory of System Bio-medicine of Jiangxi Province, Jiujiang University, Jiujiang, Jiangxi 332000, China.
Wang XinSchool of Basic Medicine, Jiujiang University, Jiujiang, Jiangxi 332005, China.
Denggang FuSchool of Basic Medicine, Jiujiang University, Jiujiang, Jiangxi 332005, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tumor microenvironment (TME) has a strong influence on the progression, therapeutic response, and clinical outcome of acute myeloid leukemia (AML), one of the most common hematopoietic malignancies in adults. In this study, we identified TME-related genes associated with AML prognosis. Gene expression profiles from AML patients were downloaded from TCGA database, and immune and stromal scores were calculated using the ESTIMATE algorithm. Immune scores were correlated with clinical features such as FAB subtypes and patient's age. After categorizing AML cases into high and low score groups, an association between several differentially expressed genes (DEGs) and overall survival was identified. Functional enrichment analysis of the DEGs showed that they were primarily enriched in the immune response, inflammatory response, and cytokine activity, and were involved in signaling processes related to hematopoietic cell lineage, B cell receptor, and chemokine pathways. Two significant modules, dominated respectively by CCR5 and ITGAM nodes, were identified from the PPI network, and 20 hub genes were extracted. A total of 112 DEGs correlated with poor overall survival of AML patients, and 11 of those genes were validated in a separate TARGET-AML cohort. By identifying TME-associated genes, our findings may lead to improved prognoses and therapies for AML.

Indexed as

HumansLeukemia, Myeloid, AcutePrognosisTranscriptomeTumor Microenvironmentacute myeloid leukemiaimmune scoresmicroenvironmentoverall survivalstromal scores

Identifiers

PMID31740623
PMCPMC6914404

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.